LOCUS BC062740 1000 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens tropomyosin 3, mRNA (cDNA clone MGC:72094
IMAGE:4271142), complete cds.
ACCESSION BC062740
VERSION BC062740.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1000)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1000)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 51 Row: e Column: 24
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1000
/db_xref="H-InvDB:HIT000260631"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:72094 IMAGE:4271142"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1000
/gene="TPM3"
/gene_synonym="hscp30"
/gene_synonym="OK/SW-cl.5"
/gene_synonym="TM-5"
/gene_synonym="TM3"
/gene_synonym="TM30"
/gene_synonym="TM30nm"
/gene_synonym="TPMsk3"
/gene_synonym="TRK"
/db_xref="GeneID:7170"
/db_xref="HGNC:HGNC:12012"
/db_xref="MIM:191030"
CDS 331..807
/gene="TPM3"
/gene_synonym="hscp30"
/gene_synonym="OK/SW-cl.5"
/gene_synonym="TM-5"
/gene_synonym="TM3"
/gene_synonym="TM30"
/gene_synonym="TM30nm"
/gene_synonym="TPMsk3"
/gene_synonym="TRK"
/codon_start=1
/product="TPM3 protein"
/protein_id="AAH62740.1"
/db_xref="GeneID:7170"
/db_xref="HGNC:HGNC:12012"
/db_xref="MIM:191030"
/translation="MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLV
IIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKIL
TDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI"
BASE COUNT 331 a 208 c 270 g 191 t
ORIGIN
1 gggactcagg cagcagcccc ttctttcttg ccccagtctc cagttctcca gtgttcacag
61 gtgagcctac caacagccac tgctcatgat ggaggccatc aagaaaaaga tgcagatgct
121 gaagttagac aaggagaatg ctctggatcg ggcagagcaa gctgaagctg agcagaagca
181 ggcagaagaa agaagtaaac agctggagga tgagctggca gccatgcaga agaagctgaa
241 agggacagag gatgagctgg acaagtattc tgaagctttg aaggatgccc aggagaagct
301 gaaaaagctg ctgatgagag tgagagaggt atgaaggtta ttgaaaaccg ggccttaaaa
361 gatgaagaaa agatggaact ccaggaaatc caactcaaag aagctaagca cattgcagaa
421 gaggcagata ggaagtatga agaggtggct cgtaagttgg tgatcattga aggagacttg
481 gaacgcacag aggaacgagc tgagctggca gagtctaagt gttctgagct ggaggaggag
541 ctgaagaatg tcaccaacaa cctcaagtct cttgaggctc aggcggagaa gtactctcaa
601 aaagaagata aatatgagga agaaatcaag attcttactg ataaactcaa ggaggcagag
661 acccgtgctg agtttgctga gagatcggta gccaagctgg aaaagacaat tgatgacctg
721 gaagatgagc tctatgccca gaaactgaag tacaaggcca ttagcgagga gctggaccac
781 gccctcaatg acatgacctc tatataatta tcaccgtttc tgctctgttc tggatctgcc
841 ccctttactc ctcggggaac ccaaggcccc actctcgctc tggattccat ttgggtcagc
901 ctggctggtc cccaaggcat taggatgggg gagcaaaaag caacttatgt attttcttcc
961 acccccaccc caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//