LOCUS BC062700 1502 bp mRNA linear HUM 16-DEC-2003
DEFINITION Homo sapiens bromodomain, testis-specific, mRNA (cDNA clone
IMAGE:6617741), partial cds.
ACCESSION BC062700
VERSION BC062700.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1502)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1502)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 51 Row: n Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502452.
FEATURES Location/Qualifiers
source 1..1502
/db_xref="H-InvDB:HIT000260591"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6617741"
/tissue_type="Testis"
/clone_lib="NIH_MGC_82"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..>1502
/gene="BRDT"
/gene_synonym="BRD6"
/db_xref="GeneID:676"
/db_xref="MIM:602144"
CDS 110..>1502
/gene="BRDT"
/gene_synonym="BRD6"
/codon_start=1
/product="BRDT protein"
/protein_id="AAH62700.1"
/db_xref="GeneID:676"
/db_xref="MIM:602144"
/translation="MSLPSRQTAIIVNPPPPEYINTKKNGRLTNQLQYLQKVVLKDLW
KHSFSWPFQRPVDAVKLKLPDYYTIIKNPMDLNTIIKRLENKYYAKASECIEDFNTMF
SNCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQEEQVVGVKERIKKGTQQNIAVSSAK
EKSSPSATEKVFKQQEIPSVFPKTSISPLNVVQGASVNSSSQTAAQVTKGVKRKADTT
TPATSAVKASSEFSPTFTEKSVALPPIKENMPKNVLPDSQQQYNVVKTVKVTEQLRHC
SEILKEMLAKKHFSYAWPFYNPVDVNALGLHNYYDVVKNPMDLGTIKEKMDNQEYKDA
YKFAADVRLMFMNCYKYNPPDHEVVTMARMLQDVFETHFSKIPIEPVESMPLCYIKTD
ITETTGRENTNEASSEGNSSDDSEDERVKRLAKLQEQLKAVHQQLQVLSQVPFRKLNK
KKEKSKKKKKKKKK"
misc_feature 188..514
/gene="BRDT"
/gene_synonym="BRD6"
/note="BROMO; Region: bromo domain"
/db_xref="CDD:smart00297"
misc_feature 920..1240
/gene="BRDT"
/gene_synonym="BRD6"
/note="BROMO; Region: bromo domain"
/db_xref="CDD:smart00297"
BASE COUNT 537 a 286 c 289 g 390 t
ORIGIN
1 ggggacccca tcaacatcgt gcgacagtcc gggcagttga gaaggccacc ccgcttcgtg
61 cctgcagccc aggacatgta cttgtagaca ggattcaaag cagttaagaa tgtctctgcc
121 aagtcgacaa acagctatta ttgttaaccc tcctccacca gaatatataa atactaagaa
181 aaatgggcga ttgacaaatc aacttcagta tctacaaaaa gttgtcctaa aggatttatg
241 gaagcatagt ttttcatggc cctttcaacg tcctgtggat gctgtgaaac taaagttgcc
301 tgattattat accattataa aaaacccaat ggatttaaat acaattatta agcgcttgga
361 gaataaatat tatgcgaagg cttcagaatg tatagaagac ttcaatacaa tgttctcaaa
421 ttgttattta tataacaagc ctggagatga cattgttctt atggcacaag ctctagagaa
481 gctgtttatg cagaaattat ctcagatgcc acaagaagag caagttgtgg gtgttaagga
541 aagaatcaag aaaggcactc aacagaatat agctgtttct tctgctaaag aaaaatcatc
601 acccagcgca acagaaaaag tatttaagca gcaagaaatt ccttctgtat ttcctaagac
661 atctatttct cccttgaacg tggtacaggg agcttcagtc aactccagtt cacaaactgc
721 ggcccaagtt acaaaaggtg tgaagaggaa agcagataca acaactcctg caacttcagc
781 agttaaagca agtagtgaat tttctccaac attcacagaa aaatcagtgg cactgccacc
841 tataaaagaa aatatgccaa agaatgtttt gccagattct cagcaacaat ataatgttgt
901 gaagactgtt aaagtaactg aacaattaag gcactgtagt gagattctta aagaaatgct
961 tgcaaagaaa catttttcat atgcatggcc cttttataat cctgttgacg ttaatgcttt
1021 gggactccat aactactatg acgttgtcaa aaatccgatg gatcttggaa ctattaagga
1081 gaaaatggat aaccaagaat ataaggatgc atacaaattt gcggcagatg ttagattaat
1141 gttcatgaat tgctacaagt acaatcctcc agatcacgaa gttgtgacaa tggcaagaat
1201 gcttcaggat gttttcgaaa cgcatttttc aaagatcccg attgaacctg ttgagagtat
1261 gcctttatgt tacatcaaaa cagatatcac agaaaccact ggtagagaga acactaatga
1321 agcctcctct gaagggaact cttctgatga ttctgaagat gagcgagtta agcgtcttgc
1381 aaagcttcag gagcagctta aagctgtaca tcaacagctc caggttttgt cccaagtacc
1441 tttccgtaag ctaaataaaa agaaagagaa gtccaaaaaa aaaaaaaaaa aaaaaaaaaa
1501 aa
//