LOCUS BC062619 914 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hepatitis B virus x interacting protein, mRNA (cDNA
clone MGC:71071 IMAGE:5190406), complete cds.
ACCESSION BC062619
VERSION BC062619.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 914)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 914)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: e Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..914
/db_xref="H-InvDB:HIT000260529"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71071 IMAGE:5190406"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..914
/gene="HBXIP"
/gene_synonym="XIP"
/db_xref="GeneID:10542"
/db_xref="HGNC:HGNC:17955"
/db_xref="MIM:608521"
CDS 77..598
/gene="HBXIP"
/gene_synonym="XIP"
/codon_start=1
/product="hepatitis B virus x interacting protein"
/protein_id="AAH62619.2"
/db_xref="GeneID:10542"
/db_xref="HGNC:HGNC:17955"
/db_xref="MIM:608521"
/translation="MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFV
PLEAPLRSTPRSRQVTEACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVG
VLCTDSQGLNLGCRGTLSDEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQK
HDGITVAVHKMAS"
BASE COUNT 254 a 204 c 236 g 220 t
ORIGIN
1 gccacgaact gaagcactga ggcccggctg cagacctctc ccgagagggg aataatccgt
61 gccggccggt tccgccatgg agccaggtgc aggtcacctc gacggtcacc gcgcggggag
121 cccaagcctt cgtcaggctc tgtgcgacgg aagcgcagtg atgttttcca gtaaagaacg
181 cggacgttgc accgtgatca attttgtccc tttggaggcg ccgttacggt ccacgccccg
241 ctcgcgtcaa gtgactgagg cctgtggtgg agaaggacgt gccgtgccgc tgggttctga
301 gccggagtgg tcggtgggtg ggatggaggc gaccttggag cagcacttgg aagacacaat
361 gaagaatccc tccattgttg gagtcctgtg cacagattca caaggactta atctgggttg
421 ccgcgggacc ctgtcagatg agcatgctgg agtgatatct gttctagccc agcaagcagc
481 taagctaacc tctgacccca ctgatattcc tgtggtgtgt ctagaatcag ataatgggaa
541 cattatgatc cagaaacacg atggcatcac ggtggcagtg cacaaaatgg cctcttgatg
601 ctcatatctg ttcttcagca gcctgtcata ggaactggat cctacctatg ttaattacct
661 tatagaacta ctaaagttcc agtagttagg ccattcattt aatgtgcatt aggcactttt
721 ctgtttattt aagagtcaat tgctttctaa tgctctatgg accgactatc aagatattag
781 taagaaagga tcatgttttg aagcagcagg tccaggtcac tttgtatata gaattttgct
841 gtattcaata aatctgtttg gaggaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
901 aaaaaaaaaa aaaa
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