LOCUS BC062341 4083 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens slingshot homolog 1 (Drosophila), mRNA (cDNA clone
MGC:71173 IMAGE:6376684), complete cds.
ACCESSION BC062341
VERSION BC062341.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4083)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4083)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: m Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254883.
FEATURES Location/Qualifiers
source 1..4083
/db_xref="H-InvDB:HIT000260341"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71173 IMAGE:6376684"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4083
/gene="SSH1"
/gene_synonym="KIAA1298"
/gene_synonym="SSH-1"
/db_xref="GeneID:54434"
/db_xref="HGNC:HGNC:30579"
/db_xref="MIM:606778"
CDS 80..3229
/gene="SSH1"
/gene_synonym="KIAA1298"
/gene_synonym="SSH-1"
/codon_start=1
/product="slingshot homolog 1 (Drosophila)"
/protein_id="AAH62341.1"
/db_xref="GeneID:54434"
/db_xref="HGNC:HGNC:30579"
/db_xref="MIM:606778"
/translation="MVLVTLQRSPTPSAASSSASNSELEAGSEEDRKLNLSLSESFFM
VKGAALFLQQGSSPQGQRSLQHPHKHAGDLPQHLQVMINLLRCEDRIKLAVRLESAWA
DRVRYMVVVYSSGRQDTEENILLGVDFSSKESKSCTIGMVLRLWSDTKIHLDGDGGFS
VSTAGRMHIFKPVSVQAMWSALQVLHKACEVARRHNYFPGGVALIWATYYESCISSEQ
SCINEWNAMQDLESTRPDSPALFVDKPTEGERTERLIKAKLRSIMMSQDLENVTSKEI
RNELEKQMNCNLKELKEFIDNEMLLILGQMDKPSLIFDHLYLGSEWNASNLEELQGSG
VDYILNVTREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVH
CKMGVSRSASTVIAYAMKEFGWPLEKAYNYVKQKRSITRPNAGFMRQLSEYEGILDAS
KQRHNKLWRQQTDSSLQQPVDDPAGPGDFLPETPDGTPESQLPFLDDAAQPGLGPPLP
CCFRRLSDPLLPSPEDETGSLVHLEDPEREALLEEAAPPAEVHRPARQPQQGSGLCEK
DVKKKLEFGSPKGRSGSLLQVEETEREEGLGAGRWGQLPTQLDQNLLNSENLNNNSKR
SCPNGMEDDAIFGILNKVKPSYKSCADCMYPTASGAPEASRERCEDPNAPAICTQPAF
LPHITSSPVAHLASRSRVPEKPASGPTEPPPFLPPAGSRRADTSGPGAGAALEPPASL
LEPSRETPKVLPKSLLLKNSHCDKNPPSTEVVIKEESSPKKDMKPAKDLRLLFSNESE
KPTTNSYLMQHQESIIQLQKAGLVRKHTKELERLKSVPADPAPPSRDGPASRLEASIP
EESQDPAALHELGPLVMPSQAGSDEKSEAAPASLEGGSLKSPPPFFYRLDHTSSFSKD
FLKTICYTPTSSSMSSNLTRSSSSDSIHSVRGKPGLVKQRTQEIETRLRLAGLTVSSP
LKRSHSLAKLGSLTFSTEDLSSEADPSTVADSQDTTLSESSFLHEPQGTPRDPAATSK
PSGKPAPENLKSPSWMSKS"
BASE COUNT 1032 a 1161 c 1082 g 808 t
ORIGIN
1 ccgggcccgg cccgggcggc ggtggcggtg gcggctctag ctcgagacgt ctgtggcgcc
61 ctcgcaccgc gccgcagcca tggtcctggt gaccctgcag cgctcgccca cgcccagcgc
121 cgcctcctcc tcggccagca acagcgagtt ggaggctggc agcgaagaag atcgaaaatt
181 aaacctcagc ttaagtgaga gctttttcat ggtgaaaggc gcagccctct tcttacaaca
241 gggaagcagc cctcaaggcc agcggagtct tcagcacccc cacaagcatg caggtgatct
301 gcctcaacat cttcaggtga tgatcaacct tctgcgttgc gaagacagaa tcaagctggc
361 agtgcgcctg gagagcgcct gggcggaccg ggtccggtac atggtggtgg tgtacagcag
421 cgggcgccag gacaccgagg agaatatctt gctgggagtg gacttttcca gtaaggaaag
481 taaaagctgc accattggga tggttctccg actgtggagc gacacgaaaa tccaccttga
541 tggagatggt gggttcagcg tgagcacagc aggaaggatg cacatattta agcctgtgtc
601 tgtccaggcc atgtggtctg ccctgcaggt gcttcacaag gcctgcgaag tggcccggag
661 gcacaactac ttccccgggg gtgtagctct catctgggct acctactatg agagctgcat
721 cagctccgag cagagctgca tcaacgagtg gaacgccatg caggacctgg agtctacgcg
781 gcccgactcc cccgcgctat ttgtggacaa gcccactgaa ggggaaagga ccgagcgcct
841 catcaaagcc aagctccgaa gcatcatgat gagccaggat ctagaaaatg tgacttccaa
901 agagattcgt aatgaattag agaaacagat gaattgtaac ttgaaggaac tcaaggaatt
961 tatagacaat gagatgctac ttatcttggg acagatggac aagccctccc ttatcttcga
1021 tcatctttat ctcggctctg aatggaatgc atccaatctg gaggaactgc agggctcagg
1081 ggttgattac attttaaatg ttaccagaga aatcgataat ttttttcctg gcttatttgc
1141 atatcataac atccgagtct acgatgaaga gaccacagac ctcctcgccc actggaatga
1201 agcgtatcat tttataaaca aagcgaagag gaaccattcc aagtgcctgg tgcattgcaa
1261 aatgggcgtg agtcgctcgg cctccacagt catagcctat gcaatgaagg aattcggctg
1321 gcctctggaa aaagcatata actatgtaaa gcagaagcgc agcatcacgc gccccaacgc
1381 gggctttatg aggcagctgt ctgagtatga aggcatcttg gatgcaagca aacagcggca
1441 caacaagctg tggcgtcagc agacagacag cagcctccag cagcctgtgg atgaccctgc
1501 aggacctggc gacttcttgc cagagacccc agatggcacc ccggaaagcc agctgccctt
1561 cttggatgat gccgcccagc ccggcttagg gccccccctc ccctgctgtt tccggcgact
1621 ctcagacccc cttctgcctt cccctgagga tgaaactggc agcttggtcc acctggagga
1681 tccggagagg gaggctctgt tggaggaagc tgctccacct gcagaggtgc acaggccggc
1741 cagacagccc cagcaaggtt ccggactctg tgagaaggat gtgaagaaga aactagagtt
1801 tgggagtccc aaaggtcgga gcggctcctt gctgcaggtg gaggagacgg aaagggagga
1861 gggcctggga gcagggaggt gggggcagct tccaacccag ctcgatcaaa acctgctcaa
1921 ctcggagaac ctaaacaaca acagcaagag gagctgtccc aacggcatgg aggatgatgc
1981 tatatttggg atccttaaca aagtgaagcc ttcctataaa tcctgtgccg actgcatgta
2041 ccctacagcc agcggggctc ctgaggcctc cagggagcga tgtgaggacc ccaatgctcc
2101 cgccatctgc acccagccag ccttcctacc ccacatcacg tcctcccctg tggcccactt
2161 ggccagcagg tcccgtgttc cggagaagcc agcctctggc ccaaccgaac ctcccccgtt
2221 cctaccacca gcaggctcca ggagggcaga caccagtggc cctggggctg gagctgccct
2281 agagccacca gccagccttt tggaaccttc cagagagacc ccaaaagtcc tgccaaagtc
2341 cctccttttg aagaattctc actgtgataa gaaccctccc agcacagaag tggtaataaa
2401 ggaagaatcg tcacccaaga aagatatgaa gccagccaag gacctgaggc ttctgttcag
2461 taatgaatct gagaagccga caaccaacag ctacctgatg cagcaccagg agtccatcat
2521 tcagctgcag aaggcaggct tggtccgcaa gcacaccaaa gagctagagc ggctgaagag
2581 cgtgcctgca gacccagcac ctccctccag ggatggccct gccagcaggc tggaggccag
2641 catccccgag gagagccagg atccagccgc gctccacgag ctgggccccc tggttatgcc
2701 cagccaggcc gggagtgatg agaagtcaga ggccgccccc gcttcattgg aaggaggctc
2761 actgaagagc ccccctcctt tcttctaccg cctggaccac accagtagtt tctcaaaaga
2821 ctttctgaag accatctgct acacccccac ctcctcttcc atgagctcca acctgacccg
2881 gagttccagc agcgatagca tccacagtgt ccgtgggaag cccgggctgg tgaagcagcg
2941 gacgcaggag attgagaccc ggctccggct ggcgggcctc accgtctctt ccccactgaa
3001 gcgctcacac tctcttgcca agctggggag tctcaccttc tcaacggaag acctgtccag
3061 tgaggctgac ccgtccaccg tcgctgactc ccaggacacc actttgagtg aatcttcctt
3121 cttgcatgag ccccagggaa ccccgaggga cccagctgca acctccaaac catcagggaa
3181 acccgcccca gaaaacttaa agagcccttc gtggatgagc aaaagctgac ccgccttttg
3241 ctgcgtcagg ctgggcggat attttcatat gatccctccc tcactttcac tgtggatttg
3301 gatcgacccc ttacatcttg atttccctta aacgagtgaa gtcatcctaa cttttcccct
3361 actcttgcca tagagaggag gagaagaaac taaccaacat gcagcacaag aaggggagct
3421 gtcagtcgtg tggcctggga gaaccaggag ccgccggcca ggagacacaa aactccgctc
3481 ccaccgtgtc ttcaagaaga accatgtttt aggaagaacg tgcacacata ggcgcacaca
3541 tccagactgt tcccttcgca tcctgcagaa gagtcctggt ggtggcagcc tcaccgcggc
3601 acacgttcta gctcattctt ggcctcgcag aaaactctcg gatggcaaca ttaagtccta
3661 cctctgttct cgctgcgctt tttattttta aaacacacga atgaccaagg cttgttccag
3721 ggaataatgc tctgtctgaa agcgtttttc caaaaaaaga atttttcgtt ttgtgttttg
3781 gttgggaccc cagacgtgtc aagactttta acccgacagc cccaagcact gctgagtaaa
3841 gtcatcagat gagtagtccc acgctgttgt tgagctgact ctgtgcccga atggtggtgc
3901 aggcgccctg tcctggttgt gttgttacgt gtttgaccag cacaggggtc cggtggggaa
3961 aatgtatggg ttgttctcag ttgttgctaa tgctgaagtt taaatctcaa ggggaagggc
4021 ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4081 aaa
//