LOCUS BC060864 2519 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase-like 4, mRNA (cDNA clone
MGC:71806 IMAGE:30341070), complete cds.
ACCESSION BC060864
VERSION BC060864.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2519)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2519)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: e Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38348337.
FEATURES Location/Qualifiers
source 1..2519
/db_xref="H-InvDB:HIT000260166"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71806 IMAGE:30341070"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2519
/gene="GALNTL4"
/gene_synonym="GalNAc-T15"
/gene_synonym="GALNT15"
/gene_synonym="GALNT18"
/gene_synonym="MGC71806"
/db_xref="GeneID:374378"
/db_xref="HGNC:HGNC:30488"
CDS 413..2236
/gene="GALNTL4"
/gene_synonym="GalNAc-T15"
/gene_synonym="GALNT15"
/gene_synonym="GALNT18"
/gene_synonym="MGC71806"
/codon_start=1
/product="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase-like 4"
/protein_id="AAH60864.1"
/db_xref="GeneID:374378"
/db_xref="HGNC:HGNC:30488"
/translation="MVCTRKTKTLVSTCVILSGMTNIICLLYVGWVTNYIASVYVRGQ
EPAPDKKLEEDKGDTLKIIERLDHLENVIKQHIQEAPAKPEEAEAEPFTDSSLFAHWG
QELSPEGRRVALKQFQYYGYNAYLSDRLPLGRPLPDLRPSGCRNLSFPDSLPEVSIVF
IFVNEALSVLLRSIHSAMERTPPHLLKEIILVDDNSSNEELKEKLTEYVDKVNSQKPG
FIKVVRHSKQEGLIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRII
SPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWKLENSTAPIRSPALIGCF
IVDRQYFQEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTE
DLTAHVRRNALRVAEVWMDEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTF
RWYLVSVYPEMRMYSDIIAYGVLQNSLKTDLCLDQGPDTENVPIMYICHGMTPQNVYY
TSSQQIHVGILSPTVDDDDNRCLVDVNSRPRLTECSYAKAKRMKLHWQFSQGGPIQNR
KSKRCLELQENSDLEFGFQLVLQKCSGQHWSITNVLRSLAS"
BASE COUNT 591 a 678 c 753 g 497 t
ORIGIN
1 gctgttctcc tagcagcgcg ggccggtcgg accgccaagg cagccggcgc tggcgatggg
61 aagcggcgtg gccgccgaca caggcagtgg caaagtttcc cagacgtaca catctggacg
121 cgcggctgcc ggctacccgt gacccctcta ggaagggttc agggattttt aatttggaaa
181 aaaatccacc tggtttcctt tgtcaaggtc tctccgggtg gccagcggca ggagctgcaa
241 acttgggcac ggcggctaca ccggcagcgg accgggcttt ggagaacctc gggactcagg
301 tgctgaggtg cccagcggct ccggacgtgc tacggggtgc gagcgcgggg gagttcgggg
361 cgcacgacaa ggaagggccc ccgggagctc tatatggagg aaggagccca gaatggtgtg
421 caccaggaag accaaaactt tggtgtccac ttgcgtgatc ctgagcggca tgactaacat
481 catctgcctg ctctacgtgg gctgggtcac caactacatc gccagcgtgt atgtgcgggg
541 gcaggagccg gcgcccgaca agaagctgga ggaagacaaa ggggacactc tgaagattat
601 tgagcggctg gaccacctgg agaatgtcat caagcagcac attcaagagg ctcctgccaa
661 gcctgaggag gcagaggccg agcccttcac agactcctct ctgtttgcac actggggcca
721 ggagctcagc cccgaaggcc ggcgcgtggc cctgaagcaa ttccagtact acggctacaa
781 cgcctacctc agcgaccgcc tgcccctggg ccggcccctg cctgacctca gacccagtgg
841 gtgccgtaac ctctcatttc ctgacagcct gccagaggtg agcatcgtgt tcatcttcgt
901 caatgaagcg ctttcagtgc tgctgcgctc catccactcg gccatggaac gcacgccccc
961 acatctgctc aaggagatca ttctggtgga tgacaacagc agtaacgagg aactgaagga
1021 gaagctgacc gaatatgtgg acaaggtgaa cagccagaag ccaggcttca tcaaagtcgt
1081 gcgtcacagc aagcaggaag gcctcatccg ctccagggtc agtggctgga gggcggccac
1141 tgcccctgtg gtggcactct ttgatgccca cgtggagttc aatgtgggct gggctgaacc
1201 tgtactcacc cgcatcaagg agaaccggaa gcggatcatc tcgccatcct ttgataacat
1261 caaatatgac aactttgaga tagaagagta cccgctggct gcccagggct ttgactggga
1321 gctgtggtgc cgctacctaa atccccccaa ggcctggtgg aagctggaga actccacagc
1381 gccaatcagg agccctgccc tcattggctg cttcattgtg gaccggcagt acttccagga
1441 gatcggcctg ctggacgaag gcatggaagt ctacgggggc gagaatgtgg agcttgggat
1501 cagggtgtgg cagtgtggcg ggagtgtgga ggtcctgccc tgctcacgga ttgcccacat
1561 tgagcgagcc cacaagccct acacagagga cctcaccgcc catgtccgca ggaacgctct
1621 cagggtggct gaagtctgga tggatgaatt taaaagccac gtctacatgg catggaacat
1681 accgcaggag gactcaggaa ttgacattgg ggacatcact gcaaggaagg ctctcaggaa
1741 acagctgcag tgcaagacct tccggtggta cctggtcagc gtgtacccag agatgaggat
1801 gtactccgac atcattgcct atggagtgct gcagaattct ctgaagactg atttgtgtct
1861 tgaccagggg ccagatacag agaatgtccc catcatgtac atctgccatg ggatgacgcc
1921 tcagaacgtg tactacacga gcagtcagca gatccatgtg ggcattctga gccccaccgt
1981 ggatgatgat gacaaccgat gcctggtgga cgtcaacagc cggccccggc tcaccgaatg
2041 cagctacgcc aaagccaaga ggatgaagct tcactggcag ttctctcagg gaggacccat
2101 ccagaaccgc aagtctaagc gctgtctgga gctgcaggag aatagcgacc tggagttcgg
2161 cttccagctg gtgttgcaga agtgctcggg ccagcactgg agcatcacca acgtcctgag
2221 gagcctcgcg tcctgaccca ccggggccac ttccggctgc ctctttgcta ctgtgtagca
2281 cctgctgcaa cgttgcctgc tgtccacgtg gggttgtttg gagtctgggg aaccaggtta
2341 gtgggccccc aagaagagct ttttatttcc tattcaattt tcatggagtt tatagaaaga
2401 tgctgattgg taggtgatgg tatgatatca aactattttg cagttgtaaa taggggacag
2461 atggaaaata tttataactg acaataaaat attattaaga aaagaaaaaa aaaaaaaaa
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