LOCUS BC060839 4169 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b, mRNA (cDNA clone MGC:71739
IMAGE:5273705), complete cds.
ACCESSION BC060839
VERSION BC060839.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4169)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4169)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: n Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42476153.
FEATURES Location/Qualifiers
source 1..4169
/db_xref="H-InvDB:HIT000260141"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71739 IMAGE:5273705"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4169
/gene="PTPLB"
/db_xref="GeneID:201562"
/db_xref="HGNC:HGNC:9640"
CDS 53..817
/gene="PTPLB"
/codon_start=1
/product="protein tyrosine phosphatase-like (proline
instead of catalytic arginine), member b"
/protein_id="AAH60839.1"
/db_xref="GeneID:201562"
/db_xref="HGNC:HGNC:9640"
/translation="MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVI
YNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPS
SVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL
PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFL
ILIMISYIPIFPQLYFHMIHQRRKILSHTEEHKKFE"
BASE COUNT 1190 a 823 c 832 g 1324 t
ORIGIN
1 gtagtccggc ccgagccgct cgcgctagga gagcgggctt cgggcacttg acatggcggc
61 agtggcggcg actgcagcag cgaaggggaa tgggggcggc ggtggcaggg ccggggccgg
121 ggacgccagc ggcacgcgga agaagaaggg cccggggccc ctggccacgg cgtacctggt
181 catctacaat gtggtgatga cagccgggtg gctggttata gcggttggtc tggtccgagc
241 atacctggct aagggtagct accatagcct ttattattca attgaaaagc ctttgaaatt
301 ctttcaaact ggagccttat tggagatttt acattgtgct ataggaattg ttccatcttc
361 tgttgtcctg acttctttcc aggtgatgtc aagagttttt ctaatatggg cagtaacaca
421 tagcgtcaaa gaggtacaga gtgaagacag tgtcctcctg tttgttattg catggacgat
481 cacggaaatc atccgttact ccttttatac attcagtcta ttaaaccatc tgccttacct
541 catcaaatgg gccaggtaca cacttttcat tgtgctgtac ccaatgggag tgtcaggaga
601 actgctcaca atatatgcag ctctgccctt tgtcagacaa gctggcctat attccatcag
661 tttacccaac aaatacaatt tctcttttga ctactatgca ttcctgattc taataatgat
721 ctcctacatt ccaatttttc cccagttata cttccacatg atacaccaga gaagaaagat
781 cctttctcat actgaagaac acaagaaatt tgaatagttc ctgctttctg cacctcccac
841 caaaacaaac ttttcaatga tcaaaaaatg ctgcagattt tttgagttcc caatacgttt
901 catagaaaat aagtaagaac tatttttaaa atattcaaac aaaactaaaa caaaaatcca
961 gtgtcacatg ggcctgagat tttattttag aaaaaggttg ttacataaaa caccctggcc
1021 agttcatttc agcatgctct ttcaaccaga agttcttaat atttatgatg gcactagaaa
1081 gggatttggc attttatgtc cttctgtgtc cttcatgtat ctgatcaatg aagacctgta
1141 acactaagta cttgagagtt acagtctgaa taatgaagtc gtaccagctg aatagcccag
1201 cttgcagtat agttatgttt cagtctgcag tgtgtttagc attcccttgt caaagtgctt
1261 gactgcatgc tggaaacttt gtatttttga agcggcaaac tctgttctct ggaatgctct
1321 gaagttatgg ctgggaccta tcccctcaca tctaatgaat gaattataaa atgtatatgt
1381 ctatgaagct tcggggtagt gcctgtaatc agaaaacaac ttagaaccct tttgtttgtt
1441 tccaattgag tcattactgc ctgccactaa gaaacgtgct tgaatctaat aagtatgtgt
1501 taccgtaaag aatatatctt atctggagct cagcctcaat catgtcttaa caaaatgaca
1561 ggtctcagaa agggggagct caatagctca aaagtgacaa gtccttttca cagcaccgtt
1621 ctcagaacac ctctgagtaa cgtgtttgcc agtagctatt ctcactgatg cactgatggc
1681 cctgaagaag cggatccagt cacataggaa aggaggctgt gttagtgaaa gcacatggaa
1741 ggtgttgctt tagaaaggta gtcaggaaaa acattcagga atagatttat acaccattat
1801 tgttttattt ttaaattttc attcactctt ctgtttggat acttttgcta attaacgtcc
1861 tatgttaatt tccaccaagc tataagtcca tagtcagtaa aacattcccc ttgggctgtc
1921 atgagctaaa agcagtgtca tctccgcatg ttggagcagc caagaaatag tttggtacta
1981 ccgacattgt ctaatccatg tcacatcctc atacaattta attgctcaac catgcattta
2041 aaactcctca agaaaggatt ggtactgcaa ctgtaggtaa actgaaaaaa aataagaaag
2101 aaagagttgg atgaaaatgt gaaagcccaa gtttagatgt gcattaagta ttaaatagca
2161 cagtatcttc ttcatggagc cttttttcct cccccatccc ctgcagctgc ctttttttgg
2221 gggcagggtg ggggttgatg ttgaacttta agagtttaaa agtttagctt attgagtagt
2281 tgtcatttaa aatataattg cgaatatcag aaaactcata ctggaaaact aaattttttt
2341 tttctcttga gacggagtct cgctctgttg cccaggctgg agtgcagtgg cgcgatctcg
2401 gctcactgca agctccacct cccgggttca cgccatcctc ctgcctcagc ctcctgagta
2461 gctgggacta caggtgcctg ccaccacacc cagctaattt tttttgtgtt tttagtagag
2521 acggggtttc accgtgttag ccaggatggt cttgatctcc tgacctcgtg atccacccgc
2581 ctcagcctcc caaagtgctg ggattgcagg catgagccac tgcacccaac ccctggaaaa
2641 ctaaattttt aagtgcttat ttttatagaa gtttgaaaat ttaatgcagg caggtgtgta
2701 ataaattatt tttgaattga acattaaaat tctgcttctt aaagtcagca ctcaacttgg
2761 acatgttgaa attagaatct attcttgtat ttgatagaca aaatatgtgg gaaagatttt
2821 ttgcatgact tttctctcat tttattcttc cataatgtat ttctactata aaatagaatc
2881 aacttgggtt atatttgtca tttactttgt tctgttagat tttttcagtt gtttttggaa
2941 aaattctaga aatcaggatg aaaaatgcag cttttccagg gttgctggac tgggggtttt
3001 atttgggcct ccttattata atttgtcact acttataaaa aacattctgt tgcaaacagt
3061 ggtgttgcat tgaattgaac tttggcaatg agaacacagc acacagctcc cttttcaaaa
3121 agggtctcaa ccccagtgtg tatttttgta catcaacatt tagaatactt atggcagata
3181 agtaaggcat gtcactgtgt ccttcagtaa cctctctcag taactggttt ctttatccct
3241 aacatgaatt catttctcct ttgaagtcat ttattatttt ataaattgag aacaaccaca
3301 ccaccaaatg tcacaccttc ttataaagtg tgaacaagga aggtcatgtt tttgtgggta
3361 ttttgtcaga cttagaggtt tcatttcagg gcatagtcaa aggcatcatc ctcccaacta
3421 cccacttgat tatgtatttc agatccctcc gtgggggcct tcttctgaca gagaattctt
3481 tgaggtccgc agtagtgctt ttgtcagcac agactgctaa tctacatctt gctgcgttct
3541 gtttgctgag gttgggctta ttcatttaac acgtaccaac cattatccag aggcaccatg
3601 gagagttagt catggaataa agcactgtcc ttgcagatga aaaaagtctc cagagcagac
3661 ttctgacagg aaaggtttag atgctggaga gttgaagagg tgtaagaaga gatcgtgccc
3721 tcatttttca cttatttttt tggttattca tttataataa aaggttggca ttgatatggt
3781 acaacctgca aattacttgc agttctgagt ttcagataaa acattataaa acattaaatt
3841 caatacatac tgctcctttg aaatttgggt aaaaaattgt acaaccgtat atatagtcat
3901 ttttgtattt tttctatgtt gtgaaaacca aaattgtaat tttataagtc tttgattcac
3961 taaaattata taatttaaat gtattttttg tatatttaga aataaggagt ccagagacta
4021 cgcttaactt tctatgcatg catttgaaag ctgtttttac ctgataatgt agtaataagt
4081 tgtattcata aaatactgat ctgtgttgca tttcaaaata aactggtgtg tgctctgcct
4141 ggatttgaaa taccaaaaaa aaaaaaaaa
//