LOCUS BC060827 4221 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens sphingosine-1-phosphate receptor 3, mRNA (cDNA clone
MGC:71696 IMAGE:30342032), complete cds.
ACCESSION BC060827
VERSION BC060827.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4221)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4221)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: e Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38788192.
FEATURES Location/Qualifiers
source 1..4221
/db_xref="H-InvDB:HIT000260129"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71696 IMAGE:30342032"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4221
/gene="S1PR3"
/gene_synonym="EDG-3"
/gene_synonym="LPB3"
/gene_synonym="S1P3"
/db_xref="GeneID:1903"
/db_xref="HGNC:HGNC:3167"
/db_xref="MIM:601965"
CDS 397..1533
/gene="S1PR3"
/gene_synonym="EDG-3"
/gene_synonym="LPB3"
/gene_synonym="S1P3"
/codon_start=1
/product="sphingosine-1-phosphate receptor 3"
/protein_id="AAH60827.1"
/db_xref="GeneID:1903"
/db_xref="HGNC:HGNC:3167"
/db_xref="MIM:601965"
/translation="MATALPPRLQPVRGNETLREHYQYVGKLAGRLKEASEGSTLTTV
LFLVICSFIVLENLMVLIAIWKNNKFHNRMYFFIGNLALCDLLAGIAYKVNILMSGKK
TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGM
CWLIAFTLGALPILGWNCLHNLPDCSTILPLYSKKYIAFCISIFTAILVTIVILYARI
YFLVKSSSRKVANHNNSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACRVQACPI
LFKAQWFIVLAVLNSAMNPVIYTLASKEMRRAFFRLVCNCLVRGRGARASPIQPALDP
SRSKSSSSNNSSHSPKVKEDLPHTAPSSCIMDKNAALQNGIFCN"
BASE COUNT 1081 a 1089 c 995 g 1056 t
ORIGIN
1 tagtctctga ctcgctcggg cagaggccga ggaagccggt tccggggacg ggcaacaggg
61 actcagggac cagaaggcgg ctgcaggacg cgaccgagca ggaccccagg cccgggaacg
121 acgtcgcgag cgctgagact gccgggcctc ccagcccatc tggcattcga gcgcaggacc
181 gggcgccccg gcaccgccgc gcgccacccg ctaggatgcc ggtggcccca gcgccctcag
241 ccgacggagg agcccttttt caacgccctc gctggagtct ggcctgcacg ccttgctgaa
301 tgaagccgga acctcagccc cgcttccctt tgaaatgaat gttcctgggg cgccctctcg
361 tggattttgg agctaatcgt ctgtgaatgc caagtgatgg caactgccct cccgccgcgt
421 ctccagccgg tgcgggggaa cgagaccctg cgggagcatt accagtacgt ggggaagttg
481 gcgggcaggc tgaaggaggc ctccgagggc agcacgctca ccaccgtgct cttcttggtc
541 atctgcagct tcatcgtctt ggagaacctg atggttttga ttgccatctg gaaaaacaat
601 aaatttcaca accgcatgta ctttttcatt ggcaacctgg ctctctgcga cctgctggcc
661 ggcatcgctt acaaggtcaa cattctgatg tctggcaaga agacgttcag cctgtctccc
721 acggtctggt tcctcaggga gggcagtatg ttcgtggccc ttggggcgtc cacctgcagc
781 ttactggcca tcgccatcga gcggcacttg acaatgatca aaatgaggcc ttacgacgcc
841 aacaagaggc accgcgtctt cctcctgatc gggatgtgct ggctcattgc cttcacgctg
901 ggcgccctgc ccattctggg ctggaactgc ctgcacaatc tccctgactg ctctaccatc
961 ctgcccctct actccaagaa gtacattgcc ttctgcatca gcatcttcac ggccatcctg
1021 gtgaccatcg tgatcctcta cgcacgcatc tacttcctgg tgaagtccag cagccgtaag
1081 gtggccaacc acaacaactc ggagcggtcc atggcactgc tgcggaccgt ggtgattgtg
1141 gtgagcgtgt tcatcgcctg ctggtcccca ctcttcatcc tcttcctcat tgatgtggcc
1201 tgcagggtgc aggcgtgccc catcctcttc aaggctcagt ggttcatcgt gttggctgtg
1261 ctcaactccg ccatgaaccc ggtcatctac acgctggcca gcaaggagat gcggcgggcc
1321 ttcttccgtc tggtctgcaa ctgcctggtc aggggacggg gggcccgcgc ctcacccatc
1381 cagcctgcgc tcgacccaag cagaagtaaa tcaagcagca gcaacaatag cagccactct
1441 ccgaaggtca aggaagacct gccccacaca gccccctcat cctgcatcat ggacaagaac
1501 gcagcacttc agaatgggat cttctgcaac tgatcgtctc catgcgccct gctctgcggc
1561 tgtgttctta tttattgcat gcgtcgcttc cacaggggcc cctcaagagc tgtgactcgg
1621 gagagctacc ttactttgac caacagcctg cccagtgtgg atgtctctta cagagggggc
1681 ccaaggaatc accaccccgc ttcagtgtaa acaacgtgcc ttgtccactt tgggctccag
1741 agtctttcag atgtactaag ctgctgacat catccactgc cttctgctgc atcctagaca
1801 ccctccctgt tgttcacaga gagggaaggt cgtgggccac acaatgctgt gtgaccctct
1861 ccgtgtgcct ctgaatggtg ttttgatgat tttacactac atttcctgtg cgtagaatgg
1921 atgcttgtat attcgtacac ctctatgtta cacagaattt gtgttgcagg tgtttgccat
1981 gtggtaccta catagaatct ccatacaaca cacaggtaac aggttataca agtggattca
2041 gactgaaccc ccagtacaag gacattgttt tgaactaggt ggacatgcca tccctggtct
2101 ccttagactg acatgattct catgttaacc aagttttaaa agttcaaatt ccccaaaaag
2161 gcttgtccaa ggctggcccc agatgtgtgg gtctgaccca caccagccct gtgtcctgtc
2221 ctttcagtca tttgtccctg cgtaatttta atcgtattcc aaagcccaat tatgtgatgg
2281 ttttcaggtt tctgcaaatt acagaagagc cagccaagat cacccaggag cttgtgcccc
2341 cagatgggcc aaagaaagag cctatgaagg agaagcagaa gcagacggct ggcctggctc
2401 accttcccac gccagtgggg caggggtctg cttcaggaaa tggaagctgt ccaggaaatg
2461 agcagagatt cacaagacag cactttgatt ctatgttgag tttgtttcta tattagaaaa
2521 gcagcaagtc agtaatcccc cgtggcatca cagctaagta gctgtggcca ccggcagttt
2581 cacagcatcc tgaaagctgg cactgatcgt gactatcagt gaaagaagtt taattttcag
2641 gttagaaaat gtgatctggc agtttatgca ttcttcagag taatgtaata atacctatgt
2701 gatgctgtaa ttttactttt caacataagt tgaacccgta gcagtctgtt taccttgtaa
2761 agggattact tagaagacat ttttgtacat gctcttcccc aaggattgta cgtattatac
2821 aaatagatgg aaagaaaagt gaacacgttt gtagaacttt cataagcaca cagttgctgt
2881 gttgagttct ctttaaaaac aaggacaaaa ccaaccagcg ttcaaaggaa cctcccatca
2941 gagtccccta aagtatttta ggttcagtga gcatttgcct gaataaaacc taaaagagta
3001 gtcttaacac attactaact ttttctaaga gaaattgatt cctgttttgt catctgatgc
3061 aatttgctct tataaagaga cattttcata ggttcagagt aactcacctc catgggctga
3121 ccaaaggctt ttctaatttt tgttactgat gagatgaaac ctatttgtaa ggagatcttc
3181 cccaggagca tttctgttgc cttcttgaca tcaatgaaaa gtagcatatt ctcttatgaa
3241 atagcatgag aaaacacagg gcatttctag gacagtaaaa cgttaaagta ctggattaag
3301 aaaacaacaa caggctgggc gcagtggctc acacctgtaa tcccagcact ttgggaggct
3361 gaggcgggtg gatcacctga ggtcaggagt ttgtgaccag cctggccaac atagtgaaat
3421 cctgtttcta ctaaaaatac aaaaattagc tggatgcgat agcacgtgcc tgtagtccca
3481 gctactcggg aggctgaggc tggagagttg ctcaaacccg ggaggcggag attgcagtga
3541 gccaagatcg caccgctgca ctccagcctg ggtgacagag cgaccctctg tctcaaaaaa
3601 taataataat aataaataaa acaacaacaa aatgcatcag agagccaaaa cattcagtat
3661 tgcattttca cataggtgat gaaatgactt tggaacttta tctgtgttat agttatgagt
3721 tgctttggga gacttggagc tctctgtagc tattgttcat aacactttgc tccataaccc
3781 tgatgtccgc agtatctaag tatctcagcc ttcatccatt aactctacta gggagcccac
3841 agccaccatt tccactagga ggtatcaata tttgtggtat gacataaggc tcccttgaaa
3901 taacaagact tttgagcaat ctgaattaaa aatacatcaa aaaagtaata gcgctcattt
3961 gctaaatgca aaaaataatc acctttgata ccaatgtgca ccaatatgcc taactagcta
4021 gccagctgga gataatttac cagggaatgt ttcaaagccc taaccttgaa gtttggaaac
4081 aggtggtctt ctatgctgca gagaaactat gcattaggtc tcttttcaat tagaaacctt
4141 tactatttcc aatgtatgtt tgttaaaaat aataataata aaaccaaaag cctttgtgga
4201 aacccaaaaa aaaaaaaaaa a
//