LOCUS BC060800 3937 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, zeta, mRNA (cDNA clone MGC:71609
IMAGE:30344780), complete cds.
ACCESSION BC060800
VERSION BC060800.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3937)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3937)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: h Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53832022.
FEATURES Location/Qualifiers
source 1..3937
/db_xref="H-InvDB:HIT000260102"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71609 IMAGE:30344780"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3937
/gene="NFKBIZ"
/gene_synonym="FLJ34463"
/gene_synonym="IKBZ"
/gene_synonym="INAP"
/gene_synonym="MAIL"
/db_xref="GeneID:64332"
/db_xref="HGNC:HGNC:29805"
/db_xref="MIM:608004"
CDS 116..2272
/gene="NFKBIZ"
/gene_synonym="FLJ34463"
/gene_synonym="IKBZ"
/gene_synonym="INAP"
/gene_synonym="MAIL"
/codon_start=1
/product="nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, zeta"
/protein_id="AAH60800.1"
/db_xref="GeneID:64332"
/db_xref="HGNC:HGNC:29805"
/db_xref="MIM:608004"
/translation="MIVDKLLDDSRGGEGLRDAAGGCGLMTSPLNLSYFYGASPPAAA
PGACDASCSVLGPSAPGSPGSDSSDFSSASSVSSCGAVESRSRGGARAERQPVEPHMG
VGRQQRGPFQGVRVKNSVKELLLHIRSHKQKASGQAVDDFKTQGVNIEQFRELKNTVS
YSGKRKGPDSLSDGPACKRPALLHSQFLTPPQTPTPGESMEDVHLNEPKQESSADLLQ
NIINIKNECSPVSLNTVQVSWLNPVVVPQSSPAEQCQDFHGGQVFSPPQKCQPFQVRG
SQQMIDQASLYQYSPQNQHVEQQPHYTHKPTLEYSPFPIPPQSPAYEPNLFDGPESQF
CPNQSLVSLLGDQRESENIANPMQTSSSVQQQNDAHLHSFSMMPSSACEAMVGHEMAS
DSSNTSLPFSNMGNPMNTTQLGKSLFQWQVEQEESKLANISQDQFLSKDADGDTFLHI
AVAQGRRALSYVLARKMNALHMLDIKEHNGQSAFQVAVAANQHLIVQDLVNIGAQVNT
TDCWGRTPLHVCAEKGHSQVLQAIQKGAVGSNQFVDLEATNYDGLTPLHCAVIAHNAV
VHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEA
NLELIRLFLELPSCLSFVNAKAYNGNTALHVAASLQYRLTQLDAVRLLMRKGADPSTR
NLENEQPVHLVPDGPVGEQIRRILKGKSIQQRAPPY"
BASE COUNT 1058 a 904 c 911 g 1064 t
ORIGIN
1 gtactggccc gcgccgtccg cccgccgaca gctccctgag ccagcccggg aggcagccgc
61 gcgcagcgag ccggtggcgc aggtgtcggg gtcctcgagc gcccagcctg ggagcatgat
121 tgtggacaag ctgctggacg acagccgcgg cggagagggg ctgcgggacg cggcgggcgg
181 ctgcggcctc atgaccagcc cgctcaacct gagctacttc tacggcgcgt cgccgcccgc
241 cgccgccccg ggcgcctgcg acgccagctg ctcggtcttg ggcccctcgg cgcccggctc
301 gcccggctcc gactcctccg acttctcctc tgcctcgtcg gtgtcctcct gcggcgccgt
361 ggagtcccgg tcgagaggcg gcgcccgcgc cgagcgccag ccagttgagc cccatatggg
421 ggttggcagg cagcagagag gcccctttca aggtgttcgg gtaaagaact cagtgaagga
481 actcctgttg cacatccgaa gtcataaaca gaaggcttct ggccaagctg tggatgattt
541 taagacacaa ggtgtgaaca tagaacagtt cagagaattg aagaacacag tatcatacag
601 tgggaaaagg aaagggcccg attcgttgtc tgatggacct gcttgcaaaa ggccagctct
661 gttgcattcc caatttttga caccacctca aacaccaacg cccggggaga gcatggaaga
721 tgttcatctc aatgaaccca aacaggagag cagtgctgat ctgcttcaga acattatcaa
781 cattaagaat gaatgcagcc ccgtttccct gaacacagtt caagttagct ggctgaaccc
841 cgtggtggtc cctcagagct cccccgcaga gcagtgtcag gacttccatg gagggcaggt
901 cttttctcca cctcagaaat gccaaccatt ccaagtcagg ggctcccaac aaatgataga
961 ccaggcttcc ctgtaccagt attctccaca gaaccagcat gtagagcagc agccacacta
1021 cacccacaaa ccaactctgg aatacagtcc ttttcccata cctccccagt cccccgctta
1081 tgaaccaaac ctctttgatg gtccagaatc acagttttgc ccaaaccaaa gcttagtttc
1141 ccttcttggt gatcaaaggg aatctgagaa tattgctaat cccatgcaga cttcctccag
1201 tgttcagcag caaaatgatg ctcacttgca cagcttcagc atgatgccca gcagcgcctg
1261 tgaggccatg gtggggcacg agatggcctc tgactcttca aacacttcac tgccattctc
1321 aaacatggga aatccaatga acaccacaca gttagggaaa tcactttttc agtggcaggt
1381 ggagcaggaa gaaagcaaat tggcaaatat ttcccaagac cagtttcttt caaaggatgc
1441 agatggtgac acgttccttc atattgctgt tgcccaaggg agaagggcac tttcctatgt
1501 tcttgcaaga aagatgaatg cacttcacat gctggatatt aaagagcaca atggacagag
1561 tgcctttcag gtggcagtgg ctgccaatca gcatctcatt gtgcaggatc tggtgaacat
1621 cggggcacag gtgaacacca cagactgctg gggaagaaca cctctgcatg tgtgtgctga
1681 gaagggccac tcccaggtgc ttcaggcgat tcagaaggga gcagtgggaa gtaatcagtt
1741 tgtggatctt gaggcaacta actatgatgg cctgactccc cttcactgtg cagtcatagc
1801 ccacaatgct gtggtccatg aactccagag aaatcaacag cctcattcac ctgaagttca
1861 ggagctttta ctgaagaata agagtctggt tgataccatt aagtgcctaa ttcaaatggg
1921 agcagcggtg gaagcgaagg atcgcaaaag tggccgcaca gccctgcatt tggcagctga
1981 agaagcaaat ctggaactca ttcgcctctt tttggagctg cccagttgcc tgtcttttgt
2041 gaatgcaaag gcttacaatg gcaacactgc cctccatgtt gctgccagcc tgcagtatcg
2101 gttgacacaa ttagatgctg tccgcctgtt gatgaggaag ggagcagacc caagtactcg
2161 gaacttggag aacgaacagc cagtgcattt ggttcccgat ggccctgtgg gagaacagat
2221 ccgacgtatc ctgaagggaa agtccattca gcagagagct ccaccgtatt agctccatta
2281 gcttggagcc tggctagcaa cactcactgt cagttaggca gtcctgatgt atctgtacat
2341 agaccatttg ccttatattg gcaaatgtaa gttgtttcta tgaaacaaac atatttagtt
2401 cactattata tagtgggtta tattaaaaga aaagaagaaa aatatctaat ttctcttggc
2461 agatttgcat atttcatacc caggtatctg ggatctagac atctgaattt gatctcaatg
2521 gtaacattgc cttcaattaa cagtagcttt tgagtaggaa aggactttga tttgtggcac
2581 aaaacattat taatatagct attgacagtt tcaaagcagg taaattgtaa atgtttcttt
2641 aagaaaaagc atgtgaaagg aaaaaggtaa atacagcatt gaggcttcat ttggccttag
2701 tccctgggag ttactggcgt tggacaggct tcagtcattg gactagatga aaggtgtcca
2761 tggttagaat ttgatctttg caaactgtat ataattgtta tttttgtcct taaaaatatt
2821 gtacatactt ggttgttaac atggtcatat ttgaaatgta taagtccata aaatagaaaa
2881 gaacaagtga attgttgcta tttaaaaaaa ttttacaatt cttactaagg agtttttatt
2941 gtgtaatcac taagtctttg tagataaagc agatggggag ttacggagtt gttcctttac
3001 tggctgaaag atatattcga attgtaaaga tgctttttct catgcattga aattatacat
3061 tatttgtagg gaattgcatg cttttttttt tttttctccc gagacagggt cttgctctgg
3121 cgcccaggct ggagtacagt ggcatgatct tggctcactt cagccttgac ttgggctcaa
3181 gtgatcctcc tacctgagcc ttctgagtaa ctgggactac aggtgtgcac tcctcgcctg
3241 gctaattttt tattttttgt acaggcagga tcttgccacc ttgcccaggc tggtcttgaa
3301 ctcctgagct catgccatct gcctgcctta gtctcccaaa atgctgggat tacaggagtg
3361 agccaccatg cccggctggc agttgcatgg aagagaacac ctctttatgg cttaccctct
3421 agaatttcta atttatgtgt tctgttgaaa tttttgtttt tttaccttta ttgaaacaac
3481 aaaaagtcag tattgaaaca tatcttcctg ttttctgttg tcaaatgatg ataatgtgcc
3541 atgatgtttt atatatatca ttcagaaaaa gttttatttt ttaataacat tctattaaca
3601 ttattttgct tgccgctggc atgcctgagg aatgtatttg gctttgatta cacactaagt
3661 ttttgtaata aatttgactc attaaaaacc tttttttttt aaaaaaaaaa aaaagaaaat
3721 ctcattagtg aacttatctt tgcagctgag tacttaaatt ctttttaaaa agataccctt
3781 tggattgatc acattgtttg acccagtatg tcttgtagac acgttagtta taatcacctt
3841 gtatctctaa atatggtgtg atatgaacca gtccattcac attggaaaaa ctgatggttt
3901 taaataaact aattcactaa taaaaaaaaa aaaaaaa
//