LOCUS BC060786 4094 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens ArfGAP with SH3 domain, ankyrin repeat and PH domain
3, mRNA (cDNA clone MGC:71572 IMAGE:5298355), complete cds.
ACCESSION BC060786
VERSION BC060786.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4094)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4094)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: p Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923539.
FEATURES Location/Qualifiers
source 1..4094
/db_xref="H-InvDB:HIT000260088"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71572 IMAGE:5298355"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4094
/gene="ASAP3"
/gene_synonym="ACAP4"
/gene_synonym="CENTB6"
/gene_synonym="UPLC1"
/db_xref="GeneID:55616"
/db_xref="HGNC:HGNC:14987"
CDS 73..2784
/gene="ASAP3"
/gene_synonym="ACAP4"
/gene_synonym="CENTB6"
/gene_synonym="UPLC1"
/codon_start=1
/product="ArfGAP with SH3 domain, ankyrin repeat and PH
domain 3"
/protein_id="AAH60786.1"
/db_xref="GeneID:55616"
/db_xref="HGNC:HGNC:14987"
/translation="MPEQFSVAEFLAVTAEDLSSPAGAAAFAAKMPRYRGAALAREEI
LEGDQAILQRIKKAVRAIHSSGLGHVENEEQYREAVESLGNSHLSQNSHELSTGFLNL
AVFTREVAALFKNLIQNLNNIVSFPLDSLMKGQLRDGRQDSKKQLEKAWKDYEAKMAK
LEKERDRARVTGGIPGEVAQDMQRERRIFQLHMCEYLLKAGESQMKQGPDFLQSLIKF
FHAQHNFFQDGWKAAQSLFPFIEKLAASVHALHQAQEDELQKLTQLRDSLRGTLQLES
REEHLSRKNSGCGYSIHQHQGNKQFGTEKVGFLYKKSDGIRRAWQKRKCGVKYGCLTI
SHSTINRPPVKLTLLTCQVRPNPEEKKCFDLVTHNRTYHFQAEDEHECEAWVSVLQNS
KDEALSSAFLGEPSAGPGSWGSAGHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPT
WLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEA
QLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEA
FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT
ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF
AFPLHVDYSWVISTEPGSDSEEDEEEKRCLLKLPAQAHWASGRLDISNKTYETVASLG
AATPQGESEDCPPPLPVKNSSRTLVQGCARHASGDRSEVSSLSSEAPETPESLGSPAS
SSSLMSPLEPGDPSQAPPNSEEGLREPPGTSRPSLTSGTTPSEMYLPVRFSSESTRSY
RRGARSPEDGPSARQPLPRRNVPVGITEGDGSRTGSLPASSVQLLQD"
BASE COUNT 933 a 1173 c 1171 g 817 t
ORIGIN
1 gagtccggct cagcgcggag cagctcagtg ccccccgcgc tccgctccgg cagctccacg
61 ctcgcgcccg ccatgccgga gcagttcagc gtcgccgagt tcctggccgt caccgcggag
121 gacctcagct ccccggctgg ggccgccgcc ttcgccgcca agatgccccg gtaccgaggg
181 gcggcgctgg cgcgggagga gatcttggaa ggagaccaag ccatcctgca gagaataaag
241 aaggctgtgc gggcaatcca tagctccggc cttggccatg tggagaatga agagcagtac
301 cgagaggccg tggaatcctt aggcaacagc cacctgtccc agaacagcca tgagctgtcc
361 acaggcttcc taaacttggc cgtgttcacc cgcgaggttg ctgcgctctt caagaacctg
421 attcagaact tgaacaacat tgtctctttc cccctggaca gtctgatgaa ggggcagctg
481 agggacggtc gacaggattc caaaaaacag ctggagaagg catggaagga ctatgaagcc
541 aaaatggcca agctggagaa ggagcgcgat cgggccaggg tgacaggagg gatccctggg
601 gaggtggccc aggacatgca gagagagcgg cgcatcttcc agctgcacat gtgtgagtat
661 ctgctcaaag ccggggagag ccagatgaag caaggtcctg acttccttca gagcctcatc
721 aagttcttcc acgcccagca caactttttc caagatggct ggaaggctgc ccagagcctg
781 ttccccttca tcgagaagct ggcggcctca gtacatgcac tccatcaggc ccaggaggac
841 gaactacaga agctgaccca gctccgggac tccctccgag ggacactgca gcttgagagc
901 agagaggaac acctgagccg gaagaactca ggatgtggct atagcatcca ccagcaccaa
961 ggcaacaagc agtttgggac ggagaaagtg ggctttctat acaagaaaag tgacggaatt
1021 cgaagagcct ggcagaaaag gaagtgtgga gtcaagtatg gctgcctgac catctcacac
1081 agcacgataa accggccccc ggtgaagctg accctgctga cgtgccaagt gaggccaaac
1141 cctgaggaga aaaagtgctt cgacctggtg acccacaacc ggacgtacca ctttcaggca
1201 gaggacgagc acgagtgtga ggcgtgggtg tcagtgttgc agaacagcaa ggacgaagcc
1261 ctgagcagcg ccttcctcgg ggagcccagc gctggcccgg ggtcctgggg gtccgccggc
1321 catgatgggg agccgcacga cctcacaaag ctgctcatcg cggaggtgaa gagcaggcct
1381 gggaatagcc agtgctgcga ctgcggggct gcagacccca cgtggctcag caccaacctg
1441 ggcgtgctca cctgcatcca gtgctcgggc gtccaccgcg aactgggcgt gcgcttttcg
1501 cgcatgcagt cactcacctt ggacctgctg ggcccctccg agttgttgct ggccttgaac
1561 atgggaaaca cgagcttcaa tgaggtcatg gaggcccagc taccctcaca cggcggccct
1621 aaaccctcag ctgagagtga catgggcacc cgcagggact acattatggc caagtatgtg
1681 gagcataggt ttgcacgccg gtgcacacct gagcctcagc gactctggac agccatttgc
1741 aacagggacc tcctgtcggt actggaggcc tttgccaatg ggcaggactt tggacagccg
1801 ctgccagggc ctgatgcaca ggcacctgaa gaactcgtct tgcatttggc tgtcaaagtc
1861 gccaaccagg cttccctgcc tctggtggat ttcatcatcc agaacggtgg tcacctggat
1921 gccaaggctg ctgacgggaa cacggctctg cactacgcag cactctacaa ccagcccgac
1981 tgcctcaagc tgctgctgaa ggggagagct ttggttggca cagtaaatga agcaggcgag
2041 acagctctgg acatagccag gaagaagcac cacaaggagt gtgaggagct gctggagcag
2101 gcccaggcgg ggacctttgc cttccctcta catgtggact actcctgggt aatttccaca
2161 gagcctggct ctgacagtga ggaggatgag gaagagaagc gctgcttgct gaagctcccg
2221 gcccaggctc actgggccag tgggaggctg gacatcagca acaagaccta tgagactgtc
2281 gccagcctgg gagcagccac ccctcagggc gagagtgagg actgtccccc gcccttgcca
2341 gtcaaaaact cttctcggac tttggtccaa gggtgtgcaa gacatgccag tggagatcgt
2401 tctgaagtct ccagcctgag ttcagaggcc cctgagaccc ctgagagcct gggcagtcca
2461 gcctcctcct ccagtctgat gagccccttg gaacctgggg atcccagcca agccccaccc
2521 aactctgaag agggcctccg agagccccca ggcacctcca gacccagcct gacatccggg
2581 accacccctt cggagatgta cctccccgtc agattcagct ccgagagcac tcgctcctat
2641 cggcgggggg cgcggagccc tgaagatggt ccctcagcca ggcagcctct gcccagaagg
2701 aacgtgccgg ttggcatcac tgaaggagat ggctcaagga ctgggagtct cccagcaagt
2761 tctgtgcaac ttttgcaaga ctagctcctt gctggccccc acatgcccca tgctaggccc
2821 caatgttcag agctgggact tgagctcaca aaactgggga gctgagacat ttgttctctt
2881 ggatctcact ctctctgtcc cttgtgcctc tgtagctggc cttcttcctg ccacaggcca
2941 tgcctctacc aaggacacat ggcctttccc tgttagggct gatggcggtt ctttcctatc
3001 tcattacccg ctaggggcct gggagccctg tggctggatc tgagtgctcc tgagctggct
3061 tcagctgcag aactctcagt ccctcatcag atcgagactc tatttccccc gtcagtctgg
3121 gggcttcaca agggcaggag agccctccat cactgacttc cagatcaggg accctgccaa
3181 gtagggactg tcttctcagc cagccattta ttagtctaat attccttcac taaattccaa
3241 ctctatgtct ggacctgtgt taggcacttc agataccaca cgagtaagac aagggccctg
3301 caggggtggt cctttggtgg aaagctggtc ttaagggttg ggcttgggaa taggcagggt
3361 cagattccag ggcatggctc tggactcagc tggtttatac ctatatgacc attacagttg
3421 tctacagatc acatccattc tggctggtca acatgcatgc tgtactggct gttaaataaa
3481 aatattctga atgtcactcc ttttgaggga cagcacagcc ttccctaggc attctcctat
3541 attccccagc caaattgtag agtcagatgc acccacattt gcctgtgtcc ttgatttagc
3601 aggaaggaaa ggaatagtcg gggttgatgg atgcccactt ctcttctctt tctcttggtc
3661 aactcaggag ccttttagtc tgagggaatg gagaggcaaa gaaagaaggg agagtaatag
3721 aattgggagg gcagagactt aagggttctg cttcccagcc ctagaaattc tatcattgct
3781 cagccccaat gagaaagcag atacacctaa gccatcatca accactaaca tctcaacttg
3841 ccagttgctg ggtgctgggc cctggcagga atgggccaag ccaagcaggg gagactagag
3901 agcaccaatg gccaacacag ctgcctggct ggggaggctg tgctgtttcc cctggagacc
3961 tgactggtct gtggttccca caggaacagg gttgtctttt gagcccccag tgtctggttt
4021 cattcatctc agacttgtta tttcactcat ctctaataaa ggattggggg gtcagttaaa
4081 aaaaaaaaaa aaaa
//