LOCUS BC059377 2569 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 11 (GalNAc-T11), mRNA (cDNA clone
IMAGE:30346967), complete cds.
ACCESSION BC059377
VERSION BC059377.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2569)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2569)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: i Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11545800
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2569
/db_xref="H-InvDB:HIT000259977"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:30346967"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2569
/gene="GALNT11"
/gene_synonym="FLJ21634"
/db_xref="GeneID:63917"
CDS 356..964
/gene="GALNT11"
/gene_synonym="FLJ21634"
/codon_start=1
/product="GALNT11 protein"
/protein_id="AAH59377.1"
/db_xref="GeneID:63917"
/translation="MGSVTVRYFCYGCLFTSATWTVLLFVYFNFSEVTQPLKNVPVKG
SGPHGPSPKKFYPRFTRGPSRVLEPQFKANKIDDVIDSRVEDPEEGHLKFSSELGMIF
NERDQELRDLGYQKHAFNMLISDRLGYHRDVPDTRNAACKEKFYPPDLPAASVVICFY
NEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDFGKECCTW"
BASE COUNT 717 a 556 c 510 g 786 t
ORIGIN
1 attactcttc ccctcccctg ccagagggat ctctctggga tcttttacct tagtgcctgg
61 tggagttcct ggaggtaaag cccacagaag tgtgggtctc gcacctcctg agactgcttc
121 cccgagtttc tcactctcac tagtccacac cgagcatcca gcaccagctt atggctctgg
181 cagtttctgc tccaggtcta tagtgagcga gagctgctac tttttacttg ggcattcatt
241 caaagtgttg aagaataaca gcctctacca tcccttattc actggctcat cagctgtccc
301 aggttttgct cttctaggaa attgacaatg gcccttcagc tatgctaggt ctataatggg
361 aagtgtcaca gttcggtatt tctgttatgg gtgccttttt acatctgcga cctggacagt
421 tttgcttttt gtttatttca acttcagtga agtgactcag ccacttaaga atgtgcccgt
481 caaggggtct gggccccacg gaccatctcc aaaaaaattc tatccccgtt tcactcgagg
541 cccaagtcga gtgctcgagc cacagttcaa agcaaacaaa attgacgatg tgatagacag
601 tcgtgttgaa gatccagaag aaggccactt gaaattctct tctgaattag gtatgatttt
661 taatgaacgc gatcaagagt tgagagactt gggctatcag aaacatgctt ttaatatgct
721 tatcagtgac cgcttgggct accacagaga tgtgccagac acaaggaatg cagcatgtaa
781 agaaaagttc tacccacctg acctgccagc tgctagtgtt gttatctgtt tctataatga
841 agcgttttct gccttgcttc ggacagtgca cagtgtcata gaccgcacgc cagcacacct
901 gcttcatgag atcatccttg tggatgatga tagtgacttt ggtaaggaat gctgcacctg
961 gtaacattgg atccaggctg tcagtcacta cagcactgac aaacactaac acagctgaac
1021 tttcaagtac gtggtaggtg gggatcctac acgtgcagtc acagctgggc tgaccacaaa
1081 taagtctgaa gaaatccatt atctttgtaa cctgcttata aactatgcta cccaaatttg
1141 ggccgtgaaa ttttttccgt ggcttacttt aaaaaacaca cctcttttta tttgaaataa
1201 ctgtaggttc acaggaagtt acaaagacgg cctatgtacc tttatccagt tgctccatca
1261 taaaattccc ctgtcagaac caggaatcca cattggtaca gtgtgtgtgg tccagggtca
1321 ttctgtcaca caggtggact cccacaaccc tcactgcaat gatacagaac tgtttcctca
1381 cccggagggc ccttgtgctg cctctttcta gtcacacctc ctgctttcct ctactcttcc
1441 ccagtccctg aaaccacgac tctatgattt tgtttccatc tctgattttg ttatttcaag
1501 aatgtcatat aaatggaatc acacggtatg tgaccttttg agatgggctt ttttcatttg
1561 gcatgatgcc ttggcttatg cttctctatt aagtctctta cactgatcgt ccccagataa
1621 aagtggattg cattctgata gctcctcaat gatctctgaa tgccagtatt ttatgattca
1681 ctacatattc tatattctgt acgcctttct taattcaaca tagactcttg ctaagaatgg
1741 ctttgtgtac ccaaacagga tagaaggctt tttattacac tgctcattca gctctcagtg
1801 accttgcaag aaaggctgga agcccacttt atagagggag aaatataaaa agtaatttgc
1861 tcagacccca tagctgttaa gtagtagagt ggaaatgaga cctctggtct gcatagctcc
1921 aagccttctg ctcttttcat gacagcaggc tgcaggaaca cagtggtaca ggtgtatgcc
1981 agtgactttt tcatgcactc gagcgtttat taagtaccac ttgtatcaac atcagagttg
2041 gtataccagt atacttaaat atagaaggta aagaaatgga gagagtcatg ggagcaaaat
2101 tctcaaacct tggccaaaaa caaacaaaca aaaaacctaa taaataaatc tgagtctgga
2161 ccacgtagaa gattggttac atactgattt ctagaattta tggttggttt ttgttttttt
2221 ttaagtcaac ttgtattttg gttttcactt tgtggctatt ttacctaaaa ggaaaaattc
2281 ataatttgag gtggtttgta tattaactat ggaaagaatt actgcttatt atcttacacg
2341 atctttcaag ttattctgaa atatacaggt gaatgacata gaattcctta aaaaatattt
2401 agcaaccttg gaagaaagat gctaaattaa taaaaggaca tattcaatgc tgttcttgtt
2461 attcttggta ggggcaatag aagttgtttc ttaactattt tgaaatggac taagacttaa
2521 taaattcctt tgtaataaaa ggcatttata tcccaaaaaa aaaaaaaaa
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