LOCUS BC058831 2703 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens von Hippel-Lindau tumor suppressor, mRNA (cDNA clone
MGC:61974 IMAGE:6457060), complete cds.
ACCESSION BC058831
VERSION BC058831.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2703)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2703)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-SEP-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: NCI
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: i Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38045904.
FEATURES Location/Qualifiers
source 1..2703
/db_xref="H-InvDB:HIT000259868"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61974 IMAGE:6457060"
/tissue_type="Pooled, 40 cell lines"
/clone_lib="NIH_MGC_142"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2703
/gene="VHL"
/gene_synonym="HRCA1"
/gene_synonym="RCA1"
/gene_synonym="VHL1"
/db_xref="GeneID:7428"
/db_xref="HGNC:HGNC:12687"
/db_xref="MIM:608537"
CDS 65..583
/gene="VHL"
/gene_synonym="HRCA1"
/gene_synonym="RCA1"
/gene_synonym="VHL1"
/codon_start=1
/product="von Hippel-Lindau tumor suppressor"
/protein_id="AAH58831.1"
/db_xref="GeneID:7428"
/db_xref="HGNC:HGNC:12687"
/db_xref="MIM:608537"
/translation="MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESG
PEELGAEEEMEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLP
PGTGRRIYSYRVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERL
TQERIAHQRMGD"
BASE COUNT 673 a 580 c 671 g 779 t
ORIGIN
1 ggggcccgcg tccgacccgc ggatcccgcg gcgtccggcc cgggtggtct ggatcgcgga
61 gggaatgccc cggagggcgg agaactggga cgaggccgag gtaggcgcgg aggaggcagg
121 cgtcgaagag tacggccctg aagaagacgg cggggaggag tcgggcgccg aggagtccgg
181 cccggaagag tccggcccgg aggaactggg cgccgaggag gagatggagg ccgggcggcc
241 gcggcccgtg ctgcgctcgg tgaactcgcg cgagccctcc caggtcatct tctgcaatcg
301 cagtccgcgc gtcgtgctgc ccgtatggct caacttcgac ggcgagccgc agccctaccc
361 aacgctgccg cctggcacgg gccgccgcat ctacagctac cgagtgtata ctctgaaaga
421 gcgatgcctc caggttgtcc ggagcctagt caagcctgag aattacagga gactggacat
481 cgtcaggtcg ctctacgaag atctggaaga ccacccaaat gtgcagaaag acctggagcg
541 gctgacacag gagcgcattg cacatcaacg gatgggagat tgaagatttc tgttgaaact
601 tacactgttt catctcagct tttgatggta ctgatgagtc ttgatctaga tacaggactg
661 gttccttcct tagtttcaaa gtgtctcatt ctcagagtaa aataggcacc attgcttaaa
721 agaaagttaa ctgacttcac taggcattgt gatgtttagg ggcaaacatc acaaaatgta
781 atttaatgcc tgcccattag agaagtattt atcaggagaa ggtggtggca tttttgcttc
841 ctagtaagtc aggacagctt gtatgtaagg aggtttatat aagtaattca gtgggaattg
901 cagcatatcg tttaatttta agaaggcatt ggcatctgct tttaatggat gtataataca
961 tccattctac atccgtagcg gttggtgact tgtctgcctc ctgctttggg aagactgagg
1021 catccgtgag gcagggacaa gtctttctcc tctttgagac cccagtgcct gcacatcatg
1081 agccttcagt cagggtttgt cagaggaaca aaccagggga cactttgtta gaaagtgctt
1141 agaggttctg cctctatttt tgttgggggg tgggagaggg gaccttaaaa tgtgtacagt
1201 gaacaaatgt cttaaaggga atcatttttg taggaagcat tttttataat tttctaagtc
1261 gtgcactttc tcggtccact cttgttgaag tgctgtttta ttactgtttc taaactagga
1321 ttgacattct acagttgtga taatagcatt tttgtaactt gccatccgca cagaaaatac
1381 gagaaaatct gcatgtttga ttatagtatt aatggacaaa taagtttttg ctaaatgtga
1441 gtatttctgt tcctttttgt aaatatgtga cattcctgat tgatttgggt ttttttgttg
1501 ttgttgtttt gttttgtttt gtttttttga gatggagtct cgctcttgtc gcccaggctg
1561 gagtgcagtg gcgccatctc ggctcactgc aacctctgcc tcctgagttc acgtaatcct
1621 cctgagtggc tgggattaca ggtgcctgcc accacgctgg ccaatttttg tacttttagt
1681 ggagacagtg tttcgccatg ttggccaggc tggtttcaaa ctcctgacct caggtgatcc
1741 gcccgcctca gcctcccaga atggtgggat tacaggtgtg tgggccaccg tgcctggctg
1801 attcagcatt ttttatcagg caggaccagg tggcacttcc acctccagcc tctggtccta
1861 ccaatggatt catggagtag cctggactgt ttcatagttt tctaaatgta caaattctta
1921 taggctagac ttagattcat taactcaaat tcaatgcttc tatcagactc agttttttgt
1981 aactaataga tttttttttt ccacttttgt tctactcctt ccctaatagc tttttaaaaa
2041 aatctcccca gtagagaaac atttggaaaa gacagaaaac taaaaaggaa gaaaaaagat
2101 ccctattaga tacacttctt aaatacaatc acattaacat tttgagctat ttccttccag
2161 cctttttagg gcagattttg gttggttttt acatagttga gattgtactg ttcatacagt
2221 tttataccct ttttcattta actttataac ttaaatattg ctctatgtta gtataagctt
2281 ttcacaaaca ttagtatagt ctccctttta taattaatgt ttgtgggtat ttcttggcat
2341 gcatctttaa ttccttatcc tagcctttgg gcacaattcc tgtgctcaaa aatgagagtg
2401 acggctggcg tggtggctcc cgcctgtaat cccagtactt tgggaagcca aggtaagagg
2461 attgcttgag cccagaactt caagatgagc ctgggctcat agtgagaacc catctataca
2521 aaaattttta aaaattagca tggcggcaca catctgtaat cctagctact tggcaggctg
2581 aggtgagaag atcattggag tttaggaatt ggaggcggca gtgagccatg agtatgccac
2641 tgcactccag cctgggggac agagcaagac cctgccttaa aaaaaaaaaa aaaaaaaaaa
2701 aaa
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