LOCUS BC057389 4355 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens HCLS1 binding protein 3, mRNA (cDNA clone
IMAGE:5574764), with apparent retained intron.
ACCESSION BC057389
VERSION BC057389.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4355)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4355)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: g Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68800429
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4355
/db_xref="H-InvDB:HIT000259688"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5574764"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 903 a 1177 c 1165 g 1110 t
ORIGIN
1 gtccccgccg ccgtcatgca gtccccggcg gtgctcgtca cctccaggcg acttcagaat
61 gcccacactg gcctcgacct gactgtgccc cagcaccagg aggtacgggg caagatgatg
121 tctggacacg tggagtacca gatcctggtg gtgacccgtc tggctgcgtt caagtcggcc
181 aagcacaggc ccgaggatgt cgtccagttc ttggtctcca aaaagtacag cgagattgag
241 gagttttacc agaaactgag cagtcgttat gcagcagcca gcctcccccc actacccagg
301 aaggtcctgt ttgttgggga gtctgacatc cgggagagga gagccgtgtt caatgagatc
361 ctgcgctgtg tctccaagga tgccgagttg gcaggcagcc cagagctgct agagttctta
421 ggtaccagat ccccaggggc tgcagggctc accagcagag attcctctgt cctggatggc
481 acagacagtc agacagggaa tgatgaagag gctttcgact tttttgagga gcaagaccaa
541 gtggcagaag agggtccgcc tgtccagagc ctgaagggcg aggatgctga ggaatccttg
601 gaggaggagg aggcgctgga ccctctgggc attatgcggt tggtctcctg ttgttgagag
661 ggcccctttg gtgtattcca ggctttctgg agatgacgtc ccccttccct ggaatctgag
721 aaaagccttg agcatcccag gtcgccccct cgcagggatc tgggccacga ggccttggcc
781 tggtgtgttg ggggaagtag ctctctgcgt gcccttggtg gtgtgcatgt ctctgggact
841 gggcttaggt gtcgcctccc ttctcgggtc acaggatgtc ctccacttgt ggctccgcac
901 tggggcttgg tagagtcctc cgtgacagct cagtagtgca ggctgcgggc ctgtccggct
961 agtgtgggag gactgggtgc tccttccagc tgtgggactc gcagaggtgg ctgcggctct
1021 ctgggctgca tcatctgcat agcaggagca ttcaccttgg ccctgcctcc acacagggcc
1081 attcaccagc catacatctc tggccattta caatctcttt tcttcggttt tcctcagtga
1141 aaatggactc atggtcgtat caacctctta gggctcctgt gacgatgaac tgagttatgt
1201 aaatttagca atcagctacc atcatggccc catctttcag tggaatcaga ccaggccagg
1261 ggtgctgtcc tccccgctct ctaccacaac gaatgtctct tagccgttta ccaaagccct
1321 cgggcgccag atgagtgtag gtcctgccgc agaaaggaat tagagcccag tagaaattag
1381 gcagaagcaa gttcaacttc atcagcatgt agaattctct cctaaaatca cagcccactc
1441 tggaaaggcc ttcttcgtgg ggagggttat gggagggtgg gctgcagggt ggccatgaga
1501 ccagcgtcca ggggtgagga tttgcactgg gaaagggtac gcggcgctca gggagctgca
1561 gcagaaacag gcctgagatc tggggtcctg cggcacctgg gcacagcaag tgccctgcag
1621 tcgctcctcc tggccctccg tggctggcct tgtccctgag tggggtcagc ggccctgagg
1681 gagaggcagc cagagtagtg ggtgatgtgg ggacaagcct gtaatagtca ctccttatca
1741 gcctggccca acgcggcagg cctttcttgg gctttatttt ggtaagggtg aggctttgtt
1801 tgaactcaca ttctctgttg ttctgagtaa ccacacgtag tgccaaaccg agatggactt
1861 tggtggtctg tgccaacctt tggctgaaga acacacttag cagagcggct ccttttttgg
1921 gtaggaaaat gttctttgtg gctggcaagt gctgccttga acttcctact tacttcatta
1981 gcagattgtc aggggagatg tgtcagctat cctgggaccc cttggcgggg cggggggggg
2041 ggggggccag ccccctcccc agctctgtac tctggggccc tcacccctga atcctgggaa
2101 agcttagcac ctaagagtaa tcctgccggc ttaagaccct cccctgctgg ggtttctttt
2161 taaggacccg tgtgacaagg tgctgatgaa tcaacgttat cacctctgtc aggaataata
2221 agtaaatttt ttgagagttt atgaaatgct gggaactaag ttagcatttg cttgcatgat
2281 ctcattatat ctgtaagaca gcatttctga aactacttgc tacaacccat agtaaaaact
2341 atatggtacg ccatgaccca ggacacacat gtataaacat cccataaaac tgaagcaaaa
2401 gttcccagaa ctcatacaaa accttactaa gtgtattgta ctgggatatt ttctattcta
2461 tttcaacgtt tggaaaggtc atgactcgcc aaactgcttt caggatccac tgtgggcaca
2521 ggtcaagaaa cggagccctg gaggcctgca ctggcatcag cctcttctgt gtggtgggaa
2581 actcaagttc agggtcaggt ggttcgtcca cgttcctgca gcctgcagat ggcagagcca
2641 ggaccccacg ccatctccag tccagtcttt atcagcctgg gaggtgggca gggccccagg
2701 attatccccc tttcacagat ggtaaaatcg aggaaggagt tgagcaggat cttggccaga
2761 gccgtgtgtg tggcagagcc gtaccttgaa gttgggtttc cacctcggcc tttcacagac
2821 acccaggtgg gcttgttgat ctctcttggt gccacccacc tgccctttgg tgggggactt
2881 tctgttcttc tcgggaggct gtttgtgcac ccctctccct cccgtgcgct tggttcctgt
2941 gcagatgcag cggcacccgt ttcccagctt gccctgcccc atgtctgggc ttagctctgg
3001 gctctcctgg agcggccacc atttccatgc aaccagcctc ggtccttccc cgccgtggcc
3061 gcggcgaggc gctgctgctc tgctgaaggg ctgctccacg gcagggctgc tgggagggtg
3121 ggagtcgcca gcacaaagcc ggagcccagg ccggcctggc ttttctttgt cttttaaacc
3181 tggttttgat tagggacaag agagcgttat tacaccatta gagagcaatt aaagatagaa
3241 aaagccctca cctcggccca tcccaacacc accgctctct ccatctgctg gggctctctt
3301 ctgaccccgt cccagcagca tccatgcaac cgcaggcaca atgcacgtgc cttttcgtac
3361 tctgcttttc caccctatgg tctgtcccga ttgctgctcc atgtcgcccc tgttttgtat
3421 ttaagtttct attttagaat gtcacggtgc tgagaaaatt gacattctac cctaatagtt
3481 ctgccttatg ctggaaatcc tctgcgggaa acctttttca ttgtgactca aataacacac
3541 aattagtata gaaaaattgc aaacacagat aaaagtcctt tccctgtgaa tttctgaatg
3601 cacctttgaa tattcacatc ttactgccaa aatgagattg tcttgtgtgc cgttctggaa
3661 tttgcttttt tccagcttac atgttctagg tccttccaga tcaatagctg cactctccct
3721 ccttcctctg ctggtttctc agctcgatgg gctgtaagtg gcattaccag gcccttgctt
3781 gtgggcgtgg cggggttttc tgtaggtttt tgctattaca ggcaataacc tgaggaactt
3841 ctacatatac aaagctttta ttctatggag ccttccccta tatacgtgcc ccagagcaag
3901 gtccctgaag ctgcttctgg gggctttggg gtaccattcc agtaaaaggt tctctaaggg
3961 ctgaagcccc tctgttggga ggcccctctg cttttctaag ccctgcccac ccccgccctc
4021 agggcccact cctcccacct cttcttttgc acacagggac cccctccagg ccctgggtcc
4081 ctgaggactc acagcgtcct tgggacaggc tggctcctgt atgaacaaat gcacctgcct
4141 gcaaagctgg tcttcccaga ctccctggaa gggggagccc acacccgggt ccccgtgctg
4201 tggcctccgt ggtgaagctg gatgtttctc tggaatgcca cgttttatgg ttgtttttta
4261 atatggattt tgcttcatct ttcataaaac aaccacatgt attttagtat aaaaataata
4321 tcttactcta tatttggatg aaaaaaaaaa aaaaa
//