LOCUS BC056915 1593 bp mRNA linear HUM 05-NOV-2003
DEFINITION Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:6142405),
partial cds.
ACCESSION BC056915
VERSION BC056915.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1593)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1593)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: l Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1593
/db_xref="H-InvDB:HIT000259640"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6142405"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1593
/gene="SBF1"
/gene_synonym="MTMR5"
/db_xref="GeneID:6305"
/db_xref="MIM:603560"
CDS <1..1246
/gene="SBF1"
/gene_synonym="MTMR5"
/codon_start=2
/product="SBF1 protein"
/protein_id="AAH56915.1"
/db_xref="GeneID:6305"
/db_xref="MIM:603560"
/translation="FYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQ
FLDCVHQVHLQFPMEFEFSQFYLKFLGYHHVSRRFRTFLLDSDYERIELGLLYEEKGE
RRGQVPCRSVWEYVDRLSKRTPVFHNYMYAPEDAEVWDFYTEETLAEGPPYDWELAQG
PPEPPEEERSDGGAPQSRRRVVWPCYDSCPRAQPDAISRLLEELQRLETELGQPAERW
KDTWDRVKAAQRLEGRPDGRGTPSSLLVSTAPHHRRSLGVYLQEGPVGSTLSLSLDSD
QSSGSTTSGSRQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDK
TKHQLRYYDHRVDTECKGVIDLAEVEVVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNF
CAQDVPSAQQWVDRIQSCLSDA"
misc_feature 932..1243
/gene="SBF1"
/gene_synonym="MTMR5"
/note="PH; Region: Pleckstrin homology domain"
/db_xref="CDD:smart00233"
BASE COUNT 303 a 515 c 497 g 278 t
ORIGIN
1 cttctaccgc acgctggagg gctttcgcct gctggtggag aaggagtggc tgtccttcgg
61 ccatcgcttc agccaccgtg gagctcacac cctggccggg cagagcagcg gcttcacacc
121 cgtcttcctg cagttcctgg actgcgtaca ccaggtccac ctgcagttcc ccatggagtt
181 tgagttcagc cagttctacc tcaagttcct cggctaccac catgtgtccc gccgtttccg
241 gaccttcctg ctcgactctg actatgagcg cattgagctg gggctgctgt atgaggagaa
301 gggggaacgc aggggccagg tgccgtgcag gtctgtgtgg gagtatgtgg accggctgag
361 caagaggacg cctgtgttcc acaattacat gtatgcgccc gaggacgcag aggtgtggga
421 cttctacact gaggagacgc tggccgaggg ccctccctat gactgggaac tggcccaggg
481 gccccctgaa cccccagagg aagaacggtc tgatggaggc gctccccaga gcaggcgccg
541 cgtggtgtgg ccctgttacg acagctgccc gcgggcccag cctgacgcca tctcacgcct
601 gctggaggag ctgcagaggc tggagacaga gttgggccaa cccgctgagc gctggaagga
661 cacctgggac cgggtgaagg ctgcacagcg cctcgagggc cggccagacg gccgtggcac
721 ccctagctcc ctccttgtgt ccaccgcacc ccaccaccgt cgctcgctgg gtgtgtacct
781 gcaggagggg cccgtgggct ccaccctgag cctcagcctg gacagcgacc agagtagtgg
841 ctcaaccaca tccggctccc gtcaggctgc ccgccgcagc accagcaccc tgtacagcca
901 gttccagaca gcagagagtg agaacaggtc ctacgagggc actctgtaca agaagggggc
961 cttcatgaag ccttggaagg cccgctggtt cgtgctggac aagaccaagc accagctgcg
1021 ctactacgac caccgtgtgg acacagagtg caagggtgtc atcgacttgg cggaggtgga
1081 ggttgtggca cctggcacgc ccactatggg tgcccctaag accgtggacg agaaggcctt
1141 ctttgacgtg aagacaacgc gtcgcgttta caacttctgt gcccaggacg tgccctcggc
1201 ccagcagtgg gtggaccgga tccagagctg cctgtcggac gcctgagcct cccagccctg
1261 cccggctgct ctgcttccgg tcgttaccga ccactagggg tgggcagggc cgccccggcc
1321 atgtttacag ccccggccct cgacagtatt gaggccccga gcccccagca cttgtgtgta
1381 cagcccccgt ccccgccccg ccccgcccgg ccggccctaa cttattttgg cgtcacagct
1441 gagcaccgtg ccgggaggtg gccaaggtac agcccgcaat gggcctgtaa atagtccggc
1501 cccgtcagcg tgtgctggtc cagccagcgg ctgcaggcga gtttctagaa ccagagtcta
1561 tataaagaga gaactaacaa aaaaaaaaaa aaa
//