LOCUS BC054500 4675 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
domain (TM) and short cytoplasmic domain, (semaphorin) 4D, mRNA
(cDNA clone MGC:57659 IMAGE:5551182), complete cds.
ACCESSION BC054500
VERSION BC054500.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4675)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4675)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: f Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33942063.
FEATURES Location/Qualifiers
source 1..4675
/db_xref="H-InvDB:HIT000054075"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57659 IMAGE:5551182"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4675
/gene="SEMA4D"
/gene_synonym="CD100"
/gene_synonym="coll-4"
/gene_synonym="M-sema G"
/gene_synonym="M-sema-G"
/db_xref="GeneID:10507"
/db_xref="HGNC:HGNC:10732"
/db_xref="MIM:601866"
CDS 573..3161
/gene="SEMA4D"
/gene_synonym="CD100"
/gene_synonym="coll-4"
/gene_synonym="M-sema G"
/gene_synonym="M-sema-G"
/codon_start=1
/product="sema domain, immunoglobulin domain (Ig),
transmembrane domain (TM) and short cytoplasmic domain,
(semaphorin) 4D"
/protein_id="AAH54500.1"
/db_xref="GeneID:10507"
/db_xref="HGNC:HGNC:10732"
/db_xref="MIM:601866"
/translation="MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHE
PDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGK
SKQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDP
AHSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIR
KSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLK
ARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAE
EVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQ
FVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHK
AISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGT
CEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFF
KHGGTAELKCSQKSNLARVFWKFQNDVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQC
LSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTQGSSP
PTPAVQATSSGAITLPPKPAPTGTSCEPKIVINTVPQLHSEKTMYLKSSDNRLLMSLF
LFFFVLFLCLFFYNCYKGYLPRQCLKFRSALLIGKKKPKSDFCDREQSLKETLVEPGS
FSQQNGEHPKPALDTGYETEQDTITSKVPTDREDSQRIDDLSARDKPFDVKCELKFAD
SDADGD"
BASE COUNT 1124 a 1218 c 1185 g 1148 t
ORIGIN
1 gctgtaacac tcaccgtgaa ggtctgcagc ttcactcccg agccagcgag accacgaacc
61 caccagaagg aagaaactct gaacacatct gaacatcaga agggacagac tccagacgcg
121 ccaccactct gctaacacca gatagtggaa agaaaccatg tgctgaaatg tttgacgaca
181 ctgatggttt gactctgcta actggaatgg cttattgtgc aagaaagtac acctggtcgg
241 gtcctggggc tcatctctag caccagcaaa gatttctgaa gacgtctttc tagaaatgac
301 tggaaagttt caagaggcat aagatacagc atttcttctg aggccctgaa gaagtatcaa
361 gtgggctttg acattgcggt ggtgagagcg acccctcctc acctggagaa ctgggaaatg
421 tggattctca gggaccgcgc tgttcacgag ctccaggctg tgctgctggc cctggtcctg
481 gggcgctgag ccgcatctgc aatagcacac ttgcccggcc acctgctgcc gtgagccttt
541 gctgctgaag cccctggggt cgcctctacc tgatgaggat gtgcaccccc attagggggc
601 tgctcatggc ccttgcagtg atgtttggga cagcgatggc atttgcaccc ataccccgga
661 tcacctggga gcacagagag gtgcacctgg tgcagtttca tgagccagac atctacaact
721 actcagcctt gctgctgagc gaggacaagg acaccttgta cataggtgcc cgggaggcgg
781 tcttcgctgt gaacgcactc aacatctccg agaagcagca tgaggtgtat tggaaggtct
841 cagaagacaa aaaagcaaaa tgtgcagaaa aggggaaatc aaaacagaca gagtgcctca
901 actacatccg ggtgctgcag ccactcagcg ccacttccct ttacgtgtgt gggaccaacg
961 cattccagcc ggcctgtgac cacctgaact taacatcctt taagtttctg gggaaaaatg
1021 aagatggcaa aggaagatgt ccctttgacc cagcacacag ctacacatcc gtcatggttg
1081 atggagaact ttattcgggg acgtcgtata attttttggg aagtgaaccc atcatctccc
1141 gaaattcttc ccacagtcct ctgaggacag aatatgcaat cccttggctg aacgagccta
1201 gtttcgtgtt tgctgacgtg atccgaaaaa gcccagacag ccccgacggc gaggatgaca
1261 gggtctactt cttcttcacg gaggtgtctg tggagtatga gtttgtgttc agggtgctga
1321 tcccacggat agcaagagtg tgcaaggggg accagggcgg cctgaggacc ttgcagaaga
1381 aatggacctc cttcctgaaa gcccgactca tctgctcccg gccagacagc ggcttggtct
1441 tcaatgtgct gcgggatgtc ttcgtgctca ggtccccggg cctgaaggtg cctgtgttct
1501 atgcactctt caccccacag ctgaacaacg tggggctgtc ggcagtgtgc gcctacaacc
1561 tgtccacagc cgaggaggtc ttctcccacg ggaagtacat gcagagcacc acagtggagc
1621 agtcccacac caagtgggtg cgctataatg gcccggtacc caagccgcgg cctggagcgt
1681 gcatcgacag cgaggcacgg gccgccaact acaccagctc cttgaatttg ccagacaaga
1741 cgctgcagtt cgttaaagac caccctttga tggatgactc ggtaacccca atagacaaca
1801 ggcccaggtt aatcaagaaa gatgtgaact acacccagat cgtggtggac cggacccagg
1861 ccctggatgg gactgtctat gatgtcatgt ttgtcagcac agaccgggga gctctgcaca
1921 aagccatcag cctcgagcac gctgttcaca tcatcgagga gacccagctc ttccaggact
1981 ttgagccagt ccagaccctg ctgctgtctt caaagaaggg caacaggttt gtctatgctg
2041 gctctaactc gggcgtggtc caggccccgc tggccttctg tgggaagcac ggcacctgcg
2101 aggactgtgt gctggcgcgg gacccctact gcgcctggag cccgcccaca gcgacctgcg
2161 tggctctgca ccagaccgag agccccagca ggggtttgat tcaggagatg agcggcgatg
2221 cttctgtgtg cccggataaa agtaaaggaa gttaccggca gcattttttc aagcacggtg
2281 gcacagcgga actgaaatgc tcccaaaaat ccaacctggc ccgggtcttt tggaagttcc
2341 agaatgacgt gttgaaggcc gagagcccca agtacggtct tatgggcaga aaaaacttgc
2401 tcatcttcaa cttgtcagaa ggagacagtg gggtgtacca gtgcctgtca gaggagaggg
2461 ttaagaacaa aacggtcttc caagtggtcg ccaagcacgt cctggaagtg aaggtggttc
2521 caaagcccgt agtggccccc accttgtcag ttgttcagac agaaggtagt aggattgcca
2581 ccaaagtgtt ggtggcatcc acccaagggt cttctccccc aaccccagcc gtgcaggcca
2641 cctcctccgg ggccatcacc cttcctccca agcctgcgcc caccggcaca tcctgcgaac
2701 caaagatcgt catcaacacg gtcccccagc tccactcgga gaaaaccatg tatcttaagt
2761 ccagcgacaa ccgcctcctc atgtccctct tcctcttctt ctttgttctc ttcctctgcc
2821 tctttttcta caactgctat aagggatacc tgcccagaca gtgcttgaaa ttccgctcgg
2881 ccctactaat tgggaagaag aagcccaagt cagatttctg tgaccgtgag cagagcctga
2941 aggagacgtt agtagagcca gggagcttct cccagcagaa tggggagcac cccaagccag
3001 ccctggacac cggctatgag accgagcaag acaccatcac cagcaaagtc cccacggata
3061 gggaggactc acagaggatc gacgaccttt ctgccaggga caagcccttt gacgtcaagt
3121 gtgagctgaa gttcgctgac tcagacgcag atggagactg aggccggctg tgcatccccg
3181 ctggtgcctc ggctgcgacg tgtccaggcg tggagagttt tgtgtttctc ctgttcagta
3241 tccgagtctc gtgcagtgct gcgtaggtta gcccgcatcg tgcagacaac ctcagtcctc
3301 ttgtctattt tctcttgggt tgagcctgtg acttggtttc tctttgtcct tttggaaaaa
3361 tgacaatcct tgcatcccag tcttgtgttc cgaagtcagt cggagtactt gaagaaggcc
3421 cacgggcggc acggagttcc tgagcccttt ctgtagtggg ggaaaggtgg ctggacctct
3481 gttggctgag aagagcatcc cttcagcttc ccctccccgt agcagccact aaaagattat
3541 ttaattccag attggaaatg acattttagt ttatcagatt ggtaacttat cgcctgttgt
3601 ccagattggc acgaaccttt tcttccactt aattattttt ttaggatttt gctttgattg
3661 tgtttatgtc atgggtcatt tttttttagt tacagaagca gatgtgttaa tatttagaag
3721 aagatgtata tcttccagat tttgttatat atttggcata aaatacggct tacgttgctt
3781 aagattctca gggataaact tccttttgct aaatgcattc tttctgcttt tagaaatgta
3841 gacataaaca ctccccggag cccactcacc ttttttcttt ttcttttttt ttttttaact
3901 ttattccttg agggaagcat tgtttttgga gagattttct ttctgtactt cgttttactt
3961 ttcttttttt ttaactttta ctctctcgaa gaagaggacc ttcccacatc cacgaggtgg
4021 gttttgagca agggaaggta gcctggatga gctgagtgga gccaggctgg cccagagctg
4081 agatgggagt gcggtacaat ctggagccca cagctgtcgg tcagaacctc ctgtgagaca
4141 gatggaacct tcacaagggc gcctttggtt ctctgaacat ctcctttctc ttcttgcttc
4201 aattgcatac ccactgcctg cccagacttt ctatccagcc tcactgagct gcccactact
4261 ggaagggaac tgggcctcgg tggccggggc cgcgagctgt gaccacagca ccctcaagca
4321 tacggcgctg ttcctgccac tgtcctgaag atgtgaatgg gtggtacgat ttcaacactg
4381 gttaatttca cactccatct ccccgctttg taaataccca tcgggaagag actttttttc
4441 catggtgaag agcaataaac tctggatgtt tgtgcgcgtg tgtggacagt cttatcttcc
4501 agcatgatag gatttgacca ttttggtgta aacatttgtg ttttataaga tttaccttgt
4561 ttttattttt ctactttgaa ttgtatacat ttggaaagta cccaaataaa tgagaagctt
4621 ctatccttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//