LOCUS BC054499 5678 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens jumonji, AT rich interactive domain 1C, mRNA (cDNA
clone MGC:57577 IMAGE:5492114), complete cds.
ACCESSION BC054499
VERSION BC054499.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5678)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5678)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC054499.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11321604.
FEATURES Location/Qualifiers
source 1..5678
/db_xref="H-InvDB:HIT000054074"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57577 IMAGE:5492114"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..5678
/gene="JARID1C"
/gene_synonym="DXS1272E"
/gene_synonym="MRXJ"
/gene_synonym="MRXSJ"
/gene_synonym="XE169"
/db_xref="GeneID:8242"
/db_xref="HGNC:HGNC:11114"
/db_xref="MIM:314690"
CDS 288..4967
/gene="JARID1C"
/gene_synonym="DXS1272E"
/gene_synonym="MRXJ"
/gene_synonym="MRXSJ"
/gene_synonym="XE169"
/codon_start=1
/product="jumonji, AT rich interactive domain 1C"
/protein_id="AAH54499.1"
/db_xref="GeneID:8242"
/db_xref="HGNC:HGNC:11114"
/db_xref="MIM:314690"
/translation="MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGIC
KIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKI
PNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI
VYPYEMYQSGANLVCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPD
PEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEEL
GGDVKVESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDE
DDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYT
LQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGS
GFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFS
AFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQL
VTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPA
GRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKA
LLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCS
SSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALES
EARERRFPNSELLQQLKNCLSEAEACVSRALGLVSGQEAGPHRVAGLQMTLTELRAFL
DQMNNLPCAMHQIGDVKGVLEQVEAYQAEAREALASLPSSPGLLQSLLERGRQLGVEV
PEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKAQAEL
QELLTIAERWEEKAHLCLEARQKHPPATLEAIIREAENIPVHLPNIQALKEALAKARA
WIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTF
LKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVI
VAFKEGEQKEKEGILQLRRTNSAKPSPLASSSTASSTTSICVCGQVLAGAGALQCDLC
QDWFHGRCVSVPRLLSSPRPNPTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLV
ALQRLPVRLPEGEALQCLTERAISWQGRARQALASEDVTALLGRLAELRQRLQAEPRP
EEPPNYPAAPASDPLREGSGKDMPKVQGLLENGDSVTSPEKVAPEEGSGKRDLELLSS
LLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERIRTL
LELEKAERHGSRARGRALERRRRRKVDRGGEGDDPAREELEPKRVRSSGPEAEEVQEE
EELEEETGGEGPPAPIPTTGSPSTQENQNGLEPAEGTTSGPSAPFSTLTPRLHLPCPQ
QPPQQQL"
BASE COUNT 1227 a 1609 c 1708 g 1134 t
ORIGIN
1 ggccgcggcg tttgggaggt aactgtggtg gcgaaggctg cggtagtggg gaggcaacca
61 cacagtttgg aagaaacgga gcgggacgaa gaggcggtag cagtagagtc agcctgagac
121 tctcagagca cgacggccac acgccccctt aggccctcgg cgggcggcgg ctgccccgct
181 tagggcctag cctccgagca ttgcctcggc ttcaaacagc ggcggcgcca tgagtcctta
241 agggcggtcc aagcctcccg atccctggcc cagacctcgg gcccaccatg gagccggggt
301 ccgacgattt cctaccgcca ccggagtgcc cggtgttcga gcctagctgg gccgagttcc
361 gagaccctct tggctacatc gcgaaaatca ggcccatcgc agagaaatcg ggcatttgca
421 agatccgccc acccgcggac tggcagccac cctttgctgt ggaagtggac aacttcaggt
481 ttaccccccg aatccagagg ctgaatgagc tagaggccca gacgagagtg aaactgaact
541 acttggacca gattgccaaa ttctgggaaa tccagggctc ctccttaaag attcccaatg
601 tagaacggcg gatcttggac ctctacagtc tcagcaaaat tgtggtggag gaaggtggtt
661 atgaagctat ctgcaaggac cgtcggtggg ctcgggtagc ccagcgcctc aactatccac
721 caggcaaaaa tattggctcc ttgctacgct cccactacga acgcattgtt tatccctatg
781 aaatgtacca gtctggagcc aaccttgtgt gtaacacacg tccatttgat aatgaggaga
841 aggacaagga atacaaaccc cacagcatcc ccctacgaca gtctgtgcag ccttccaagt
901 tcaacagcta tggccggcgg gccaagagac tgcagcctga tccggaaccc acagaggaag
961 acattgagaa gaatccagag ctgaaaaagc tacagatcta tggggcaggc cccaagatga
1021 tgggcctggg cctcatggcc aaagacaaga ctctgcggaa gaaagataag gaggggcctg
1081 agtgtccccc cacagtagtg gtgaaggagg agttaggtgg ggatgtgaag gtggagtcaa
1141 catcgcctaa gaccttcctg gagagcaagg aggagctgag tcacagccca gaaccctgca
1201 ccaagatgac catgaggcta cggaggaacc acagcaatgc ccagtttatt gagtcatatg
1261 tctgccggat gtgttctcga ggggatgagg atgacaagct cctgctgtgt gatggctgtg
1321 atgacaacta ccacatcttc tgcctgctgc ctcctctgcc tgagatcccc aagggtgtct
1381 ggcggtgccc aaagtgtgtc atggcggagt gtaagcggcc cccagaagcc tttggctttg
1441 agcaggctac ccgggaatac actctgcaga gctttggcga gatggccgac tcctttaaag
1501 ctgactactt caacatgccc gtgcatatgg tgcccacaga acttgtggag aaggagttct
1561 ggaggctggt aaatagcatt gaggaagatg tgactgttga gtatggagct gacatccatt
1621 ccaaagaatt tggcagcggt ttccctgtca gtgacagtaa acggcaccta acccccgaag
1681 aggaggagta tgctaccagt ggttggaacc taaatgtgat gccggtgttg gaacagtctg
1741 tactgtgcca catcaatgca gatatctctg gcatgaaggt gccctggctc tacgtgggca
1801 tggtcttctc agccttttgc tggcatattg aggatcactg gagttactcc attaactacc
1861 tccactgggg tgagccgaag acctggtatg gggtgccctc acttgcagca gaacatttgg
1921 aagaagtgat gaagaagctg acacctgaac tatttgatag ccagcctgac ctcctgcacc
1981 aacttgtcac cctcatgaat cccaacaccc tcatgtccca tggtgtgcca gttgtccgca
2041 caaaccagtg tgcaggagag tttgtcatca ccttcccccg tgcttaccac agcggcttca
2101 accaaggcta caactttgcc gaggctgtca acttttgcac tgctgactgg ttgcctgctg
2161 ggcgccagtg cattgagcac taccgccggc tccggagata ctgcgtcttc tcccatgagg
2221 agcttatctg caagatggct gcctgcccag agaagctaga cctgaacctg gcggcagctg
2281 tgcataagga gatgttcatc atggtgcaag aagagcggcg tctacgaaag gccctgctgg
2341 agaagggtat cacagaggct gagcgagagg ctttcgagct gctcccagat gatgagcgcc
2401 agtgtatcaa gtgcaagact acgtgtttcc tgtcagccct ggcctgctac gactgcccag
2461 acggccttgt ctgcctttcc cacatcaatg atctctgcaa gtgctccagt agccggcagt
2521 acctgcggta tcggtatacc ttggatgagc ttcctgccat gctgcataag ctgaaggttc
2581 gggctgagtc ctttgacacc tgggccaaca aagtgcgagt ggccctggag gtggaggatg
2641 ggcggaagcg cagccttgaa gaactgaggg cactagagtc tgaagcccgt gagcggaggt
2701 ttcctaatag tgagctgctg cagcaactaa agaactgcct gagtgaggca gaggcttgcg
2761 tgtcccgagc tctgggactg gtcagcggcc aggaagctgg cccccacagg gtggctggtc
2821 tacagatgac cctgactgag ctccgggcct ttctggacca gatgaacaac ctgccttgcg
2881 ccatgcacca gattggggat gtcaagggtg ttctggaaca ggtggaggcc taccaggctg
2941 aggctcgtga ggccctggcc tcactgccct ccagtccagg gctactgcag tccctgttgg
3001 agagggggcg gcagctgggg gtggaggtgc ctgaggccca gcagctccag cggcaggtgg
3061 aacaggcgcg atggctggat gaggtgaaac gcacactggc cccctcagcc cgaaggggca
3121 ccttggctgt catgcgagga ctgttggtcg cgggtgccag tgtagcccct agccctgctg
3181 tggataaagc ccaggccgag ctgcaggaac tgctgaccat tgctgaacgc tgggaggaga
3241 aagcccacct ctgcctggag gccaggcaga agcatccacc agccacactt gaggccataa
3301 tccgtgaagc ggaaaacatc cctgttcacc tgcccaacat ccaggctctc aaggaggctc
3361 ttgctaaggc ccgggcctgg attgctgatg ttgatgagat ccaaaatggt gaccactacc
3421 cctgcctgga tgacttggag ggcctagtag ctgtgggccg ggacctacct gtggggctgg
3481 aggagctgag acagctagag ctacaggtac tgacagcgca ctcctggagg gagaaggcct
3541 ccaagacctt cctcaagaaa aattcttgct acacgctgct ggaggttctc tgcccatgtg
3601 cagatgccgg ctcagacagc accaagcgca gccggtggat ggagaaggag ctggggttgt
3661 acaaatctga cacagagctg ctggggctgt ctgcgcagga cctcagggac ccaggctctg
3721 tgatcgtggc cttcaaggag ggggaacaga aggagaagga gggtatcctg cagctgcgtc
3781 gcaccaattc ggccaagccc agtccactgg catcatcgag cacggcctcc tctacaacct
3841 ctatctgtgt gtgtgggcag gtgctggctg gggcgggagc tctgcagtgt gacctgtgtc
3901 aggactggtt ccatgggcgg tgtgtgtcag tgcctcgcct cctcagctct ccgaggccca
3961 atcccacctc atccccactg ctggcctggt gggaatggga caccaaattc ctgtgtccac
4021 tgtgtatgcg ctcaaggcgc ccgcgcctgg agaccatcct ggcactgctg gtagccctgc
4081 agagactgcc tgtgcggctg cccgagggcg aggccctgca gtgcctcaca gagagggcca
4141 tcagctggca aggccgcgcc aggcaggctc tggcctctga agatgtgact gctcttttgg
4201 gacggctggc tgagctccgc caacggctac aggctgaacc tagacctgag gagcctccta
4261 actaccctgc agcccctgct tctgaccccc tcagagaggg cagtggcaag gatatgccta
4321 aggtccaggg cttactggag aatggagaca gtgtgaccag tcctgagaag gtagccccgg
4381 aggagggctc aggtaagaga gatctggagc tgctgtcctc gctgttgcca cagttgactg
4441 gccctgtgtt ggaactgcct gaggcaaccc gggccccctt ggaggagctc atgatggagg
4501 gggacctgct cgaggtgacc ctggatgaga accacagcat atggcagctg ctgcaggctg
4561 gacagccccc agacctggag aggatccgca cacttctgga gctggagaag gcagagcgtc
4621 acgggagtcg ggctcggggc cgggccctgg agaggcggcg gcggcggaag gtggatcggg
4681 gtggggaggg cgatgaccca gcccgagagg agctagagcc aaagagggta cggagctcag
4741 ggccagaggc tgaggaggtc caggaggagg aagagctgga ggaggagact gggggtgagg
4801 gcccccctgc acccatcccc accactggca gccccagcac ccaggagaac cagaatggct
4861 tggaaccggc ggaagggacc acttcaggcc cctcggcccc tttctccact ctgactcccc
4921 ggctgcatct gccctgccca cagcagccgc ctcagcaaca gttgtgacag tggctgagcc
4981 tagcacagac cctgacagag acccccctcg gcctcaagga tcctctttct gaccatcaag
5041 cctgcttctt ggggggtggg cgggtagggg gggtggccat ccctgctacc cgcccacccc
5101 tgagtccctt gacttttgta ttctgactcc aaggtattgt tcagacctca gctcctgggg
5161 gccggcccct ggagtcttcc ctccctggta gcctctaacc agcattccca gacacctgag
5221 gcagatagat ggatgggctg gtgggcaggg gggtggctgg ggctgggcca tcaccattcc
5281 agagacaagg ccagtgtata tgcaaactgg gggactctcc tcccttctct ccccagttct
5341 ggtcctggcc aggccatgct acactaaccc ctgcccccac tctcctcccc tcttttcctt
5401 ccttcctacc cccttctccc tctcccttcc cctgactgtt ccacccagga ggaggaaact
5461 tcacatagcc gtgctcacag ttttttattt taaaggaatt tggctgggga gctgaacagg
5521 gctccctgtg atctgaagaa agcttttggt gcttgtcctc acaaccacct cagtcctccc
5581 tccctgtcct cccctgtctc ctttcctcct cctgggttca tgttgtaata aaagaagatt
5641 gttggtgtgt aattaatttg ttcaaaaaaa aaaaaaaa
//