LOCUS BC054345 3561 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 3, mRNA
(cDNA clone MGC:61446 IMAGE:6501674), complete cds.
ACCESSION BC054345
VERSION BC054345.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3561)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3561)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: p Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9506400.
FEATURES Location/Qualifiers
source 1..3561
/db_xref="H-InvDB:HIT000259437"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61446 IMAGE:6501674"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3561
/gene="ARHGEF3"
/gene_synonym="DKFZP434F2429"
/gene_synonym="GEF3"
/gene_synonym="STA3"
/gene_synonym="XPLN"
/db_xref="GeneID:50650"
/db_xref="HGNC:HGNC:683"
CDS 118..1698
/gene="ARHGEF3"
/gene_synonym="DKFZP434F2429"
/gene_synonym="GEF3"
/gene_synonym="STA3"
/gene_synonym="XPLN"
/codon_start=1
/product="Rho guanine nucleotide exchange factor (GEF) 3"
/protein_id="AAH54345.2"
/db_xref="GeneID:50650"
/db_xref="HGNC:HGNC:683"
/translation="MVAKDYPFYLTVKRANCSLELPPASGPAKDAEEPSNKRVKPLSR
VTSLANLIPPVKATPLKRFSQTLQRSISFRSESRPDILAPRPWSRNAAPSSTKRRDSK
LWSETFDVCVNQMLTSKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKLSIMTE
QELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLPCLSSYDSYCSNQ
VAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRH
TPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRV
LCCHGELKNNRGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLLLEDLQDG
EVRLGGSLRGAFSNNERIKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAKET
VLCAAGQAGVLDSEGSFLNPTTGSRELQGETKLEQMDQSDSESDCSMDTSEVSLDCER
MEQTDSSCGNSRHGESNV"
BASE COUNT 1041 a 787 c 817 g 916 t
ORIGIN
1 gtctccgtgt cgccgccgcc gcccggcatc gtggagctgg ggcccccttt tgcctgggag
61 ttttgtagtc gcctagggtc agcggtgaca tcccaaaggg caggcccggc agccgccatg
121 gtggccaagg attacccctt ctacctcacg gtcaagagag cgaactgcag cctggagcta
181 cccccggcca gcggtccggc caaggacgct gaggagccta gtaataaacg ggtcaaaccc
241 ctttcccgag tcacgtcgct agcaaacctc atcccgcccg tgaaggccac gccattaaag
301 cgcttcagtc aaaccctgca gcgctccatt agcttccgca gtgagagccg ccctgacatc
361 ctcgcccccc gaccctggtc cagaaatgcc gccccctcga gcacgaaacg gagagatagc
421 aagctgtgga gtgagacctt cgatgtgtgc gtcaatcaga tgcttacatc caaggaaatc
481 aaacgtcagg aggcgatctt tgagctttcc caaggagaag aagacttgat agaagacttg
541 aaattagcaa aaaaggccta tcatgacccc atgctgaaac tctccataat gacagaacaa
601 gagttgaatc aaatttttgg aacactggac tctctaattc ctctacatga agagctcctt
661 agtcagcttc gagatgttag gaagcctgat ggctcgactg aacatgttgg tcccatcctc
721 gtgggctggc tcccttgcct cagctcctat gatagctact gcagcaatca agtagccgcc
781 aaagctctgc tggaccacaa aaagcaagat caccgagtcc aggatttcct acagcgatgt
841 ttagaatccc cctttagccg caaactagat ctctggaatt tcctcgatat tccaagaagc
901 cgcctggtaa aataccctct gcttctccga gaaatcttga ggcacacacc aaatgataat
961 ccagatcagc agcacttgga agaagctata aatatcattc agggaattgt ggcagaaatc
1021 aacaccaaga ctggtgaatc tgaatgccgc tattataaag agcggcttct ttacttggaa
1081 gaaggccaga aagactccct gatcgacagc tctcgagtct tgtgttgtca tggtgaactg
1141 aagaacaatc ggggcgtgaa actgcatgtt ttcctgttcc aagaagtgct tgtgatcact
1201 cgagccgtca cccacaatga gcagctttgc taccagctgt accgtcagcc aatccccgtg
1261 aaagacctcc tgctggaaga cctccaggat ggagaagtga ggctgggtgg ctccctgcga
1321 ggggcattca gcaacaatga gagaattaaa aacttcttca gagtcagttt caaaaatgga
1381 tcccaaagtc agacccactc gctacaagcc aatgacactt tcaacaaaca gcagtggctt
1441 aactgtattc gtcaagccaa agaaacagtt ttgtgtgctg ccgggcaagc tggggtgctt
1501 gactccgagg gatcgttcct aaatcccacc accgggagca gagagctaca gggagaaaca
1561 aaacttgagc agatggacca atcggacagt gagtcagact gtagtatgga cacgagtgag
1621 gtcagcctcg actgtgagcg catggaacag acagactctt cctgtggaaa cagcaggcac
1681 ggtgaaagta acgtctgaca gaagcatgtg cacttcggga agcaggcctg catcttacct
1741 gtacagtatt tgcattccac agatggaacg gtttggagaa gcactttttc atacttttgt
1801 gaaagtatac atgttggccc agtctctcgt atctgtacct ttgtccctag tactgtaact
1861 gccaatctgt ctgtgtaagc tggaatctgt ggcaactatt accctgtgtt gtatttccca
1921 agtgtctgga tggatggaga ggtactcaaa caagttactt tcagttgtcc tgctggattt
1981 taaaaaaata gaaaaagaat ctcaaaacta ctgttttaca tagattgttt gaagagtcct
2041 tcctcttgtg cttctgtacc actttcccag ctcttagatg tggtagctaa aggcacggaa
2101 tttagacggc cttgtaaata gggcatgagg aactcatctg tgtattggga tggtattaga
2161 gagagaatca ggaaagacca actcatgaag tgaacttggt ttgatcttac tcaactagaa
2221 agcttgaaaa catccctggg gattctgaag gcttaatttt gcaaaggagg atgcattgtc
2281 tgaactttgc aacttcatcc agtgcaagtt tgatgcaaga atgtattagg acataaaata
2341 gaggctgacc ttaaaagggc caggacagaa gcggctgcca gctctgaatc tttaactgaa
2401 atgcacatgg caccaggagg tgtctctcat agttggttgc tagcctaaaa catcagaata
2461 gaacccaaag ggcttaggaa ggcctgccag gataacaaga aggccctgta ttcattgtgt
2521 ttcatctgcc taggcctact cattatttta gagaatgaat gaagcaacaa ggaagagaga
2581 ccatgactct atcgatgaca ctgtttatag aaacacagga gaggaagaat ttggaatgaa
2641 aagcacttcg tcagaacctt ctgtgggagc cattgagaga aaagcatggt ccagtgcctt
2701 ctgagaaagg ccagagcttt gggctttcct gctctgcttt tgggtcgtca atttgccatc
2761 tctggttctg tgctataatc agaattgtaa ttatgttctc cagaggccaa tttcattaac
2821 tctgattaat tagaatcagc tagccagatt agtaacctct ttgtccagcc ttgatttaca
2881 gtgcagggta aagtgcagac cttaaaaaca gctaagtacc tagaagagct ccctgcaagt
2941 gtaaatatta aggatgacct gtgcaaaatt atacccacac cagcactagt ggtaattatt
3001 ctaaattatt gccaaaaagt ttttttaatc tgtctttcaa gtttacagaa aagaaagcag
3061 taaatgcatt gatgtcattt tattatgtac atatatcatg tgcattcaag ctgtgtgaca
3121 agatatatca atataaaaac aaggtatata ctttattatt ttttgaaaac aaggatattg
3181 tgatcaattt taccctgtaa aacatatttc tgtatttata ggtcttaaac atgatgaatt
3241 ttttctatta caagtttatt taaaactgct ttctcaagtc gttattgata cagcaagtga
3301 acctgctgca gacagaagca gaggaaagcc aagaacagcc tttattggtg aagaaaagaa
3361 tgaatgattc tttgtaggcg ccatcagcca cttttagaag ccatcagcca gtgtgttggg
3421 aaaagaggtt tgtcaagtgt tggcctatgg gaaggtggtc aatgaatgtt ttgatgaaat
3481 gaatgttttt gtataatggc cttaaacttt tctggaagta tttcaaataa attacattat
3541 taagtcaaaa aaaaaaaaaa a
//