LOCUS BC054034 897 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 35kDa (U11/U12), mRNA
(cDNA clone MGC:64961 IMAGE:3901191), complete cds.
ACCESSION BC054034
VERSION BC054034.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 897)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 897)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: a Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31077202.
FEATURES Location/Qualifiers
source 1..897
/db_xref="H-InvDB:HIT000054056"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:64961 IMAGE:3901191"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..897
/gene="SNRNP35"
/gene_synonym="HM-1"
/gene_synonym="U1SNRNPBP"
/db_xref="GeneID:11066"
/db_xref="HGNC:HGNC:30852"
CDS 34..774
/gene="SNRNP35"
/gene_synonym="HM-1"
/gene_synonym="U1SNRNPBP"
/codon_start=1
/product="small nuclear ribonucleoprotein 35kDa (U11/U12)"
/protein_id="AAH54034.1"
/db_xref="GeneID:11066"
/db_xref="HGNC:HGNC:30852"
/translation="MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKG
VIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEE
RAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDR
PFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR
VWPDNDWERERDFRDDRIKGREKKERGK"
BASE COUNT 270 a 186 c 281 g 160 t
ORIGIN
1 ccgtcggaag ggagcccaag ctttgcagag aacatgaacg attggatgcc catcgccaag
61 gagtatgatc cactcaaagc gggcagcatt gatggcaccg atgaagaccc acacgaccgc
121 gcggtctgga gggcaatgct ggcacgatat gtccccaaca aaggtgtcat aggagatccc
181 ctcctcaccc tgtttgtggc cagactaaac ttgcagacca aggaggacaa attaaaggaa
241 gtcttttccc gctatggtga catccggcgg cttcggctgg tcagggactt ggtcacaggt
301 ttttcaaagg gctacgcctt catcgaatac aaggaggagc gtgccgtgat caaagcttac
361 cgagatgctg atggcctggt tattgaccag catgagatat ttgtggacta cgagctggaa
421 aggactctca aagggtggat ccctcggcga cttggaggcg gtcttggggg aaaaaaggag
481 tctgggcaac tgagatttgg gggacgggac cggccttttc gaaaacctat taacttgcca
541 gttgttaaaa acgacctcta tagagaggga aaacgggaaa ggcgggagcg atctcgatcc
601 cgagaaagac actgggactc gaggacaagg gatcgagacc atgacagggg ccgggagaag
661 agatggcaag aaagagagcc gaccagggtg tggcccgaca atgactggga gagagagagg
721 gacttcagag atgacaggat caaggggagg gagaagaagg aaagaggcaa gtagaggccc
781 aacagcagaa ccccaaagtg aagttacagt ggaaatgagt ggagggggat tgtctttcaa
841 cgcagcgtga gtctaatggt tgaataaaac ttactgatga tcaaaaaaaa aaaaaaa
//