LOCUS BC053859 1408 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3B, mRNA (cDNA clone MGC:61606 IMAGE:6174285),
complete cds.
ACCESSION BC053859
VERSION BC053859.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1408)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1408)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: n Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22907024.
FEATURES Location/Qualifiers
source 1..1408
/db_xref="H-InvDB:HIT000053997"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61606 IMAGE:6174285"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1408
/gene="APOBEC3B"
/gene_synonym="APOBEC1L"
/gene_synonym="ARCD3"
/gene_synonym="ARP4"
/gene_synonym="DJ742C19.2"
/gene_synonym="FLJ21201"
/gene_synonym="PHRBNL"
/db_xref="GeneID:9582"
/db_xref="MIM:607110"
CDS 82..837
/gene="APOBEC3B"
/gene_synonym="APOBEC1L"
/gene_synonym="ARCD3"
/gene_synonym="ARP4"
/gene_synonym="DJ742C19.2"
/gene_synonym="FLJ21201"
/gene_synonym="PHRBNL"
/codon_start=1
/product="APOBEC3B protein"
/protein_id="AAH53859.1"
/db_xref="GeneID:9582"
/db_xref="MIM:607110"
/translation="MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRG
RSNLLWDTGVFRGQVYFEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVA
KLAEFLSEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENF
VYNEGQQFMPWYKFDENYAFLHRTLKEILRLRIFSVAFTAAMRSCASWTWFLLCSWTR
PRSTGSLGSSPGAPASPGAVPGKCVRSFRRTHT"
BASE COUNT 380 a 344 c 341 g 343 t
ORIGIN
1 gactagttct agatcgcgat ctagaactag tagcttcaaa aaaagagcgg gacagggaca
61 agcgtatcta agaggctgaa catgaatcca cagatcagaa atccgatgga gcggatgtat
121 cgagacacat tctacgacaa ctttgaaaac gaacccatcc tctatggtcg gagctacact
181 tggctgtgct atgaagtgaa aataaagagg ggccgctcaa atctcctttg ggacacaggg
241 gtctttcgag gccaggtgta tttcgagcct cagtaccacg cagaaatgtg cttcctctct
301 tggttctgtg gcaaccagct gcctgcttac aagtgtttcc agatcacctg gtttgtatcc
361 tggaccccct gcccggactg tgtggcgaag ctggccgaat tcctgtctga gcaccccaat
421 gtcaccctga ccatctccgc cgcccgcctc tactactact gggaaagaga ttaccgaagg
481 gcgctctgca ggctgagtca ggcaggagcc cgcgtgaaga tcatggacta tgaagaattt
541 gcatactgct gggaaaactt tgtgtacaat gaaggtcagc aattcatgcc ttggtacaaa
601 ttcgatgaaa attatgcatt cctgcaccgc acgctaaagg agattctcag gctaagaatc
661 ttctctgtgg cttttacggc cgccatgcgg agctgcgctt cttggacctg gttccttctt
721 tgcagttgga cccggcccag atctacaggg tcacttggtt catctcctgg agcccctgct
781 tctcctgggg ctgtgccggg gaagtgcgtg cgttccttca ggagaacaca cacgtgagac
841 tgcgcatctt cgctgcccgc atctatgatt atgaccccct atataaggag gcgctgcaaa
901 tgctgcggga tgctggggcc caagtctcca tcatgaccta cgatgagttt gagtactgct
961 gggacacctt tgtgtaccgc cagggatgtc ccttccagcc ctgggatgga ctagaggagc
1021 acagccaagc cctgagtggg aggctgcggg ccattctcca gaatcaggga aactgaagga
1081 tgggcctcag tctctaagga aggcagagac ctgggttgag cagcagaata aaagatcttc
1141 ttccaagaaa tgcaaacaga ccgttcacca ccatctccag ctgctcacag acaccagcaa
1201 agcaatgtgc tcctgatcaa gtagattttt taaaaatcag agtcaattaa ttttaattga
1261 aaatttctct tatgttccaa gtgtacaaga gtaagattat gctcaatatt cccagaatag
1321 ttttcaatgt attaatgaag tgattaattg gctccatatt tagactaata aaacattaag
1381 aatcttccat aaaaaaaaaa aaaaaaaa
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