LOCUS BC053836 3291 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens vasohibin 2, mRNA (cDNA clone MGC:59727
IMAGE:5802700), complete cds.
ACCESSION BC053836
VERSION BC053836.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3291)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3291)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: e Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31982920
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3291
/db_xref="H-InvDB:HIT000053984"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59727 IMAGE:5802700"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_47"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3291
/gene="VASH2"
/gene_synonym="RP11-275G3.1"
/db_xref="GeneID:79805"
/db_xref="HGNC:HGNC:25723"
/db_xref="MIM:610471"
CDS 327..836
/gene="VASH2"
/gene_synonym="RP11-275G3.1"
/codon_start=1
/product="VASH2 protein"
/protein_id="AAH53836.1"
/db_xref="GeneID:79805"
/db_xref="HGNC:HGNC:25723"
/db_xref="MIM:610471"
/translation="MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKD
GGVLFHVNKSGFPIDSHTWERMWMHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYR
LSMTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLE
AVILGITHS"
BASE COUNT 875 a 834 c 887 g 695 t
ORIGIN
1 ggcgacggcc ccagcaagcc ccagcagccc cagccccagc cccaggccca gcagcagcag
61 cagcagcccc tgctctcccg ccgcccggag aggctctgca gccatgaagc caaccgtccc
121 gaggcaccgc cgtaagcagg gagcctccgc ggagctcccg ccgccgctcc cccttggtga
181 gtcctgccgc agcgagaggc atggagaagg ccgcccccgc ggggcgctga tcccctcgcc
241 gcgcccgcgc gcacacgccc cccgccgccg ccgccgctgc cgccgccgcg cgcccccagt
301 acctcgctcc ccgcccaggc cccaccatga ccggctccgc ggccgacact caccgctgcc
361 cccaccccaa aggcgccaaa ggcacccggt cccggagcag ccacgcgcgg cccgtgagcc
421 tcgccaccag cgggggctca gaggaggagg acaaagacgg cggggtgctg ttccacgtca
481 acaagagcgg cttccccatc gacagccaca cctgggagcg catgtggatg cacgtggcca
541 aggtgcaccc taagggggga gaaatggtgg gcgccatcag gaacgccgcc ttcttggcaa
601 agccttcaat accccaggtc ccaaactaca ggctgtcgat gacgatccca gactggctcc
661 aggcgatcca gaattacatg aagaccctac aatataatca cacagggacc cagttctttg
721 aaattaggaa aatgagaccg ctgagtgggt taatggaaac agcaaaagaa atgacccgag
781 agtccttgcc tatcaaatgc cttgaagctg tcatcctggg cataacccac agctaaaaca
841 agggtctagc ttctcccaca ctttctgttc catttttcac cagactcccg gctcttcagc
901 ctgagaggaa tatggtgcag agaaactgtg atggcatcga catattggtg gtgatgacca
961 cctcccttac acaatagtct catccctgca caattttata cattcgagca tcatgccatt
1021 ggaatcaccc acaacctttt gaaattgtgg ggatagaccc aggaacagcc tttgagcctg
1081 atctgccaca atcagataga agagcaaaga tgctccgaag tcctatggga tggatggctg
1141 taagggacag tggaaaagga aacactgcaa gacaggagct tgagagatgg tcccaggcaa
1201 gatcagttag gtccttgagc gctgtgctga gaaatgactt ttttccaaaa ggcaatgggc
1261 aacccagatg aaagctctga agcagaggtg tggcatgctt aggtatatgc tctagagagg
1321 tagttctcca aagcacaggc tgaaggacag attgggaaag gctgggctgg atcagcaaag
1381 cccgttggga gctgttacat gagggaatgg tgaggctaga ctcatggccc tggggatggg
1441 aatggatttc agggaatggt tttaagagct atcaaggaga tagaatgtat aggacttgca
1501 ggccaaccag acgcaggagt taatgaggaa ggagtcaacg tctccaggtt tctgaattgg
1561 gcaatcgact gcgggattag ctggaggaat gagagtggca gagaaaggat atgcgtcaat
1621 gcagacctga actaagacag tgccagtgaa ggtggaggga agggatggag gcatacatca
1681 tcaccaccac taggggactg cttagatggg aggagttatt ggagaaaggc agtgactcca
1741 catttctggc ttgcatgata atgccacaag ggaagaactt caaggagagg atcggattta
1801 gggaaagatg agctcagatt tggacatgtg aaatttgagg tgccttgtgg gatgtcggaa
1861 tgaggtattt gcaatgtgga gctcacaggg gaatctgcac tggaaatgcg aatttaggag
1921 ctgtgattag gaggttgtgc ttactgttca ataagtgaaa ggagaaaaag atcaaagatg
1981 aaatcagtat tttttggtct agtttggcac aaagagccca tgaaagagac ttaagaagga
2041 aagagaggta gaaagaaaac caggagagaa aggggatgga gaggtcagtg gaaggacatg
2101 tggctcagaa ttagactggg gacaggagga ttggtctagt ctgttttctg ggtctcctgg
2161 acatctttgt gggaaggaga atctctgtgc ctctctgcag tctgtggaac acttgcagcc
2221 ctgatctgaa accagattga ccacaggtgc cttggctgac atttgaaaaa tggaaacttg
2281 aaccttactg aggcccctcc ccaaccctct tgtcatcctc ctccctgttt cccacaaagg
2341 agatgaaaca tgtgcctggg gaacccagca ggaagctggg aatgggggtc ggggcagcag
2401 atggctcagg gccccaactc tttagtggca ggagtcagcc acagctgttc agcgaagcct
2461 cctgcaagtt taatgggggc agatgattgg ctggggattt gctggtggaa gagatcaacg
2521 aaggggaaca caagcccagg cccttcatgg ggtagacaag ctaacttcag actctttgtt
2581 gaggggtgtc tgagtgcctc tggatttagg tcattgaaat gaccacctcc cttacacaat
2641 agtctcatcc ctgcacaatt ttatacattt gcgcatcatg ccactggaat cacccacgac
2701 cttttggaat tgtggggata gacccaggaa cagcctttga gcctgtccaa atcagagaca
2761 gtgtgctcgt ggttttcctt tgttcttatc cttctgacat ttcagaaaag tgcaggaagg
2821 tggagagctt cagttcacgc tgctgaactc agggaaattt gactcttgca cacagacagg
2881 aaacacagat ccgaattctt cttctttttt tttttttttg agacggagtc ttggtctgtc
2941 gcaccactgc actccagcct gggtgacaga gtgagactgt gtctcaaaaa aatgaaaaaa
3001 aaaaaaaaga ccaccattcc tccccagaaa tgaaacccca tacccgttaa aaagtactcc
3061 ccatttcccc cctccagccc ctgcccacca ccgttctact ctctgtctgt atgcacttgc
3121 tactccaggt accgcagatg agtggaatca taccatattt gtccttttgt attaggctga
3181 tttcactcag catgtcttca aggctcattc tgcacattgc agaatttccc tcccttatga
3241 ggctgaataa attctattac atgtatacac taaaaaaaaa aaaaaaaaaa a
//