LOCUS BC053520 4456 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger, FYVE domain containing 1, mRNA (cDNA
clone MGC:51992 IMAGE:5493027), complete cds.
ACCESSION BC053520
VERSION BC053520.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4456)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4456)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: m Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30795179.
FEATURES Location/Qualifiers
source 1..4456
/db_xref="H-InvDB:HIT000053897"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51992 IMAGE:5493027"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4456
/gene="ZFYVE1"
/gene_synonym="DFCP1"
/gene_synonym="KIAA1589"
/gene_synonym="TAFF1"
/db_xref="GeneID:53349"
/db_xref="HGNC:HGNC:13180"
/db_xref="MIM:605471"
CDS 650..2983
/gene="ZFYVE1"
/gene_synonym="DFCP1"
/gene_synonym="KIAA1589"
/gene_synonym="TAFF1"
/codon_start=1
/product="zinc finger, FYVE domain containing 1"
/protein_id="AAH53520.1"
/db_xref="GeneID:53349"
/db_xref="HGNC:HGNC:13180"
/db_xref="MIM:605471"
/translation="MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLR
CEEELHRQERLRNHERIRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLE
CQKRTHSGGNKRRHPVTVYNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEI
QVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCT
VGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDL
FKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSE
VPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRH
PGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEG
VPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWSGYV
IECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNF
MAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACG
EGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVG
EAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRAC
GQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL"
BASE COUNT 1072 a 1174 c 1164 g 1046 t
ORIGIN
1 gcgccttcct gttagtccga gctgggagaa gttcactccg atcagctgat cccaactgac
61 aacaggagag gaggaagccc gggaggcaac gaaggaggag ggtggcggag atggagatga
121 ggatggatct gccggtgtcc tgaggaatag cctctgcccc cactggcgcc ctgcggcccc
181 ccgacgccgc cttgctgcgg ccgagcttct cagtggtatc ccctgaaata ctgacttcag
241 gtcgaattat attgaaaagc tcctgaccac tttctttcat taccaaaact ttgtagctga
301 tgtccaaccg atgaacccac caccgtgaac ccatcagacc tctctcagat agccataaaa
361 gacccttcca agtcaatttt gaccacatct ttgcttgcac tttatggagg atgaaaccat
421 caaaccaaat caacgttgct gctaatacaa gagtcttaga ggcagcaaat taaaaatttg
481 aacatttgtt tgtgaagaac tataacagga catgaaaggt gttctttttt aaagtgttca
541 gaaccctgtg gaagtttcgt gcagtcttca gactcaaatc ttcgtcttca cccccggggc
601 aagctcagtg actattatat ggtgggtgtg tttccttacc agcgtgagta tgagtgccca
661 gacttcccca gcagagaagg gcctgaatcc ggggctgatg tgccaggaaa gttacgcttg
721 cagcgggact gatgaagcta tctttgagtg tgatgagtgc tgcagtctgc agtgtctccg
781 ctgcgaggag gagctccatc ggcaggagcg cctgagaaac catgagcgga taagactcaa
841 acctggccat gtcccttact gtgacctctg caagggtctc agtgggcatt taccaggtgt
901 taggcagagg gcaatagtga ggtgccagac ctgcaaaatt aacttgtgcc tggagtgcca
961 gaagaggact cattctgggg gtaacaaaag gagacaccct gttactgtgt acaatgtcag
1021 taatctccag gagtcactgg aggcagaaga gatggatgag gagaccaaga ggaagaagat
1081 gactgagaag gttgtgagtt tcctcctagt agacgaaaat gaagaaattc aggtaacaaa
1141 tgaagaagac tttattagaa aattggactg caaacctgat cagcatctga aagtggtttc
1201 catttttgga aatactggtg atggaaagtc tcatactctc aaccacactt tcttttatgg
1261 tcgtgaagtc tttaaaacct ccccgaccca ggagtcctgc actgtgggag tgtgggcagc
1321 ctatgaccca gttcacaaag tagcagtgat cgatacggaa gggctcctgg gggccaccgt
1381 gaatctaagc cagagaacac ggctgctgct taaggtcctg gccatctcag acctcgtcat
1441 ctatcgaact catgcagacc ggctgcataa cgacctcttc aaattccttg gggatgcctc
1501 agaagcttat ctgaagcact tcaccaagga gctcaaggcc accactgctc gctgtggcct
1561 ggatgtccct ttatccacac tgggccctgc agttatcatc ttccatgaga ccgtgcacac
1621 ccagctactg ggctctgatc atccctcaga ggtgccagag aagctcatcc aggaccggtt
1681 ccggaagctg ggccgtttcc ctgaagcctt tagttccatt cactacaagg gaacgaggac
1741 ttacaaccct cccacggact tttctgggct tcggcgtgct ttggagcagc tactagagaa
1801 taacaccacc cgttctcccc ggcacccggg agtcatcttc aaagccctga aggcactaag
1861 tgaccgcttc agcggtgaga tccccgatga ccagatggcg cacagctcct tttttccaga
1921 tgagtatttc acctgctcct ccttgtgcct cagctgtggg gttggatgta agaaaagcat
1981 gaatcatggg aaggaaggag tgcctcatga agccaagagc cgctgcagat actcccacca
2041 gtatgacaac cgagtgtata cctgcaaggc ctgctatgag agaggcgagg aagtcagtgt
2101 agtgcccaaa acatctgctt ccactgactc cccctggatg ggtctcgcaa aatatgcctg
2161 gtctgggtat gtgatcgaat gtcctaactg tggcgtggtc tatcgtagtc ggcagtactg
2221 gtttggaaac caagatcctg tggatacggt ggtgcggaca gagattgtgc atgtgtggcc
2281 tggaactgat gggtttctga aggacaacaa caatgctgcc cagcgcctgt tggacgggat
2341 gaacttcatg gctcagtcgg tgtccgagct tagccttgga cccaccaagg ctgtgacttc
2401 ctggctgaca gaccagatcg cccctgccta ctggaggccc aactcccaga ttctgagctg
2461 caacaagtgt gcgacgtcct ttaaagataa cgacactaag catcactgcc gagcctgtgg
2521 ggagggcttc tgtgacagct gttcatcaaa gactcggcca gtgcctgagc ggggctgggg
2581 ccctgcgcca gtgcgggtct gtgacaactg ctacgaagcc aggaacgtcc agttagctgt
2641 taccgaggca caagtggacg atgaaggtgg aacgctcatt gctcggaagg tgggcgaggc
2701 cgtgcagaac actctgggag ccgtggtgac agccattgac ataccactag gtctggtaaa
2761 ggacgcggcc aggcctgcgt actgggtgcc tgaccacgaa atcctccact gccacaactg
2821 ccggaaggag ttcagcatca agctctccaa gcaccactgc cgggcctgcg gacagggctt
2881 ctgtgatgag tgctcccatg accgccgggc tgttccttct cgtggctggg accatcccgt
2941 ccgagtctgc ttcaactgca ataaaaagcc cggtgacctt taaccccagc cccctctccg
3001 agtccttcac aattccttag gttctcaggg ttagaaacag tcttgcgagg taggccctcc
3061 tcccagtcac ctgctgtggt gtgtgtcctc tcctctccgc atccagggcc actttccctc
3121 agtgggggtg agcctggcgg caggcccgaa ggtgtggacc cctcagggca ggggaccttg
3181 caacttatcg caaaggggaa tgaacctgaa tccgttgcat ttatttcagt taaaaataat
3241 gaatatatat gtgtatatct ctctctcata tatacatatg aaaggcactc ggggcgtatc
3301 gaggctgctg ctggctgtga agacttcgca cagtctcctc cgcacagggt gaggtggcag
3361 tggcagcacg tcttcctcat gagccgagcc aggtccatgg ccaccacgtg gctggcccct
3421 tcctctgctg ctcttggagc cttggaagcc tctcctgtcc ttggctcttc cctccatgcc
3481 tgtcagctgc ctggggagtg agcctccctg gtccttcctg cctgaaacag cctgaaggga
3541 attctcccta ggtctcctgg gagtcgagtc ccaattcttg gcttaagcct gttttagtca
3601 gagaccaccc aacttagcgt gcaggtcacc ggagtgggtg gagggtcaga ggtcgggtct
3661 tcggccctga gaagtagaaa tgcaggggcc gtgctgtccc tggtccccca gggaacagca
3721 aggaaggaac tgagccttct ccagcagggc ttcctgtccc gatgcttgtg tctccactcg
3781 gctttcccaa aaggcggcac ccagctcctc aatcgaagca tctgcctccc acccctcggc
3841 cccctcaagc ccaccatctg cttctgagtg tcgcactagg attttcattg cttattttaa
3901 agtgtcttaa tcctttgttc ccagacacac aacccctcta gctctcggag gggcgatcat
3961 gagaaacctt ccagggaaac tgagcacagg atgaactgtt agttgttttt aaaagtctat
4021 ataaatattt caacagatcg taaagaaaaa atttatctct ttggtccttg caagagaagt
4081 caaaggaact tttgtttctc ctcaagagcc tggacatctc tgtctgtcat gactggaaag
4141 ggcccgttgt gctgaaatcc tatcatcatg gtggatttga tcttcagtgg ccaaacacga
4201 attaaagtat aattcttaac tgaactggtg ggtgggttga gctttaggga agtatatggc
4261 ggtcattcct ggtgcgccta tcggtgtgac atgagccctg gagtgtgtcg tccctctcag
4321 ccctgctcct cctgcctcct ggggtccagt gactgggacc ctactctaga actgtgtacc
4381 atccaattcg ccatcataaa ggaatcttcc tgcaaaaaaa aaaaaaaaaa aaaaaaaaaa
4441 aaaaaaaaaa aaaaaa
//