LOCUS BC052979 3258 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ephrin-B1, mRNA (cDNA clone MGC:60068 IMAGE:6164440),
complete cds.
ACCESSION BC052979
VERSION BC052979.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3258)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3258)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: l Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31317225.
FEATURES Location/Qualifiers
source 1..3258
/db_xref="H-InvDB:HIT000053851"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60068 IMAGE:6164440"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3258
/gene="EFNB1"
/gene_synonym="CFND"
/gene_synonym="EFL3"
/gene_synonym="Elk-L"
/gene_synonym="LERK2"
/gene_synonym="MGC8782"
/db_xref="GeneID:1947"
/db_xref="HGNC:HGNC:3226"
/db_xref="MIM:300035"
CDS 800..1840
/gene="EFNB1"
/gene_synonym="CFND"
/gene_synonym="EFL3"
/gene_synonym="Elk-L"
/gene_synonym="LERK2"
/gene_synonym="MGC8782"
/codon_start=1
/product="ephrin-B1"
/protein_id="AAH52979.1"
/db_xref="GeneID:1947"
/db_xref="HGNC:HGNC:3226"
/db_xref="MIM:300035"
/translation="MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKF
LSGKGLVIYPKIGDKLDIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCN
RPEQEIRFTIKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKI
IMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKS
GPGASGGSSGDPDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQR
AAALSLSTLASPKGGSGTAGTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEM
PPQSPANIYYKV"
BASE COUNT 643 a 991 c 1011 g 613 t
ORIGIN
1 ctgagcaagg gagtagacag cacagcggca gcggagggag tctatgcgag ctggacagca
61 gtgggaggtt tgtgaggctc gcactggccg cagaccctcg ggctcgatcg cccgggagcc
121 aggactcggc gacgcgaggc tgccgggcta cccggccgag gcttcggggg cgcaaactaa
181 tgggactggc tcgctcggca gcatctcccc gctcttctaa gtacactgag cagggcccgc
241 gctgaagtag aagctgtccg ggggcgcgta gcccggagtc ccagtgtggc ccggaggaac
301 ggagcccgtg ccagggcggc ccagtcggga gcccggggac cgagcttgtg ctgtggggaa
361 acccccactt cttccaaggg acagcgatcc cgggacggtc gaggcgtcgg ggcggtcacc
421 gagacctctg cgggaagacc ccgtcgggga gagggcgcgc agccccgaag cgtctcggga
481 agtcgagcgg aatcgggcgg gatcacccgg gggcgcagag cccccgtcgc gcctcgtgcg
541 gcagcggaga gcccaggaga acgagccctc gggggccgaa gcccatgccc gggttggggg
601 cggctgccca gtgagtcctc ctggccggcc gggcggagaa gagcgacacc gaagccggcg
661 ggaggggagc acttcaaggc cggcggctgc ggaggatggg cgcctgagcg gctccgagcg
721 cagcgcggca gaggaaggcg aggcgagctt tggtgaggag gcgccaaggg atcccgaagt
781 gcagtctgcc cccgggaaga tggctcggcc tgggcagcgt tggctcggca agtggcttgt
841 ggcgatggtc gtgtgggcgc tgtgccggct cgccacaccg ctggccaaga acctggagcc
901 cgtatcctgg agctccctca accccaagtt cctgagtggg aagggcttgg tgatctatcc
961 gaaaattgga gacaagctgg acatcatctg cccccgagca gaagcagggc ggccctatga
1021 gtactacaag ctgtacctgg tgcggcctga gcaggcagct gcctgtagca cagttctcga
1081 ccccaacgtg ttggtcacct gcaataggcc agagcaggaa atacgcttta ccatcaagtt
1141 ccaggagttc agccccaact acatgggcct ggagttcaag aagcaccatg attactacat
1201 tacctcaaca tccaatggaa gcctggaggg gctggaaaac cgggagggcg gtgtgtgccg
1261 cacacgcacc atgaagatca tcatgaaggt tgggcaagat cccaatgctg tgacgcctga
1321 gcagctgact accagcaggc ccagcaagga ggcagacaac actgtcaaga tggccacaca
1381 ggcccctggt agtcggggct ccctgggtga ctctgatggc aagcatgaga ctgtgaacca
1441 ggaagagaag agtggcccag gtgcaagtgg gggcagcagc ggggaccctg atggcttctt
1501 caactccaag gtggcattgt tcgcggctgt cggtgccggt tgcgtcatct tcctgctcat
1561 catcatcttc ctgacggtcc tactactgaa gctacgcaag cggcaccgca agcacacaca
1621 gcagcgggcg gctgccctct cgctcagtac cctggccagt cccaaggggg gcagtggcac
1681 agcgggcacc gagcccagcg acatcatcat tcccttacgg actacagaga acaactactg
1741 cccccactat gagaaggtga gtggggacta cgggcaccct gtctacatcg tccaagagat
1801 gccgccccag agcccggcga acatctacta caaggtctga gtgcctggca cggcctcagg
1861 cccccgaggg acagtcggcc tggaccggac ctctcctttc gcccccacac cccctcccct
1921 tgccagctgt gcccaccttt gtatttagtt ttgtagtttc ttggctttta taatccccct
1981 ttttccctgc cccctgggct tcggaggggg gtgcttgtgc ccctaacccc catgctcttg
2041 tgccttcccc ctctggccag gcctctgggc tccgtggggg cgccccttct tggaaggcag
2101 ggctggacac tgatggacag caggcaggga gacagtcccc tggccctgcc cctccctcgc
2161 cccccttgcc accttcccag gactgcttgt ccgctatcat cactgttttt aatgcttttg
2221 tgttcatttt ttagctgtca actcattttc atctgttttt tgaagaaaaa tggaaaaatg
2281 taaaaggcag cccctcccca ggctttgtga gcctggccca agccagtaca agagggcctg
2341 gggcacgatg tggtcagcca ggaagcatag gatgccattt cttttataga ttccttggta
2401 tttctggtgg ggtaaggggc aggccagggc tgttcacgcc catgagggaa gaggaaagtg
2461 ccactgggca aggtgtccca ccctcccctc ctgaccctcc tacgaggctt atcctggcaa
2521 tggggtagtc actgccaccc ttccacacac acacacacac acacacacac acacacaaaa
2581 atcccttcct tgtgggattc ttgggcatct cctgcctccc tcactctcac ggtaattaat
2641 gtcttaattg gctgttgcct ggggaacagg agagctgctg caggcagatg acctcatggg
2701 gggtggaggg aggtgaggtg cccaggtggc tatttgccct gcagagctgg gagtttcacc
2761 cccacccccc accctgttct ctccttacct ttggcatcct ttggcctggt ggggaaacag
2821 aggcccaggg tggagaccta agcgggtata agaccaggtg gcctgctcct tttctgggcc
2881 ctagcacagg tgggtaaccc ccacccaacc cagctcctgc tgctgtccca gtcttgggct
2941 ggggcctgga aagaggaaga ggctgcctgg ggctgggcca gcccgctgtg cactttgacc
3001 ccagttcctt gccagcacgg ctgctaacag actgccactt gagtgcgcct tgcaggcact
3061 cccagagcag ccatggaagg agctggccct cacaccatcc acctccacac tgcctcctgg
3121 ccagctgccc accccagtgc caggtgggag agggagcaga acagccagcc ccttccaggt
3181 ggcagtcgga agggtttttg tttttgtttc tgttgccatt tgtgtaaata ctagtctttt
3241 tggaaaaaaa aaaaaaaa
//