LOCUS BC052813 1207 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens excision repair cross-complementing rodent repair
deficiency, complementation group 1 (includes overlapping antisense
sequence), mRNA (cDNA clone MGC:61535 IMAGE:6526165), complete cds.
ACCESSION BC052813
VERSION BC052813.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1207)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1207)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: p Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544168.
FEATURES Location/Qualifiers
source 1..1207
/db_xref="H-InvDB:HIT000053833"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61535 IMAGE:6526165"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1207
/gene="ERCC1"
/gene_synonym="UV20"
/db_xref="GeneID:2067"
/db_xref="HGNC:HGNC:3433"
/db_xref="MIM:126380"
CDS 132..1103
/gene="ERCC1"
/gene_synonym="UV20"
/codon_start=1
/product="excision repair cross-complementing rodent
repair deficiency, complementation group 1 (includes
overlapping antisense sequence)"
/protein_id="AAH52813.1"
/db_xref="GeneID:2067"
/db_xref="HGNC:HGNC:3433"
/db_xref="MIM:126380"
/translation="MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQ
SLPTVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSII
VSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSL
GKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK
PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPG
LGPQKVRALGKNPRSWGKERAPNKHNLRPQSFKVKKEPKTRHSGFRL"
BASE COUNT 298 a 348 c 349 g 212 t
ORIGIN
1 tggggacctg acgctatgga gctctcggag ttttgtgggg gacggctgtg agtggggggt
61 tcctgctgcg ggatgagaac gtagacgcca gtggctcact cgctcctggc accttccctt
121 tcaggctcca gatggaccct gggaaggaca aagagggggt gccccagccc tcagggccgc
181 cagcaaggaa gaaatttgtg atacccctcg acgaggatga ggtccctcct ggagtggcca
241 agcccttatt ccgatctaca cagagccttc ccactgtgga cacctcggcc caggcggccc
301 ctcagaccta cgccgaatat gccatctcac agcctctgga aggggctggg gccacgtgcc
361 ccacagggtc agagcccctg gcaggagaga cgcccaacca ggccctgaaa cccggggcaa
421 aatccaacag catcattgtg agccctcggc agaggggcaa tcccgtactg aagttcgtgc
481 gcaacgtgcc ctgggaattt ggcgacgtaa ttcccgacta tgtgctgggc cagagcacct
541 gtgccctgtt cctcagcctc cgctaccaca acctgcaccc agactacatc catgggcggc
601 tgcagagcct ggggaagaac ttcgccttgc gggtcctgct tgtccaggtg gatgtgaaag
661 atccccagca ggccctcaag gagctggcta agatgtgtat cctggccgac tgcacattga
721 tcctcgcctg gagccccgag gaagctgggc ggtacctgga gacctacaag gcctatgagc
781 agaaaccagc ggacctcctg atggagaagc tagagcagga cttcgtctcc cgggtgactg
841 aatgtctgac caccgtgaag tcagtcaaca aaacggacag tcagaccctc ctgaccacat
901 ttggatctct ggaacagctc atcgccgcat caagagaaga tctggcctta tgcccaggcc
961 tgggccctca gaaagtaaga gctctgggaa agaacccaag gagttggggg aaggagagag
1021 ccccaaataa acacaacctg agaccccaaa gttttaaggt gaaaaaagaa ccaaagacca
1081 gacacagtgg cttccgcctg taatcccaac attttgggag gccaaggcgg gaggactgct
1141 tgaggccaga agttggagac cagcctgggc aagtggacac ctcattttta ctaaaaaaaa
1201 aaaaaaa
//