LOCUS BC051291 1917 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens retinol dehydrogenase 11 (all-trans/9-cis/11-cis),
mRNA (cDNA clone MGC:59671 IMAGE:3533223), complete cds.
ACCESSION BC051291
VERSION BC051291.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1917)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1917)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: a Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070271.
FEATURES Location/Qualifiers
source 1..1917
/db_xref="H-InvDB:HIT000053607"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59671 IMAGE:3533223"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1917
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
CDS 40..957
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/codon_start=1
/product="RDH11 protein"
/protein_id="AAH51291.1"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
/translation="MVELMFPLLLLLLPFLLYMAAPQIRKMLSSGVCTSTVQLPGKVV
VVTGANTGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFL
AEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAPSRIV
NVFSLAHHLGRIHFHNLQGEKFYNAGLAYCHSKLANILFTQELARRLKGSGVTTYSVH
PGTVQSELVRHSSFMRWMWWLFSFFIKTPQQGAQTSLHCALTEGLEILSGNHFSDCHV
AWVSAQARNETIARRLWDVSCDLLGLPID"
BASE COUNT 566 a 438 c 446 g 467 t
ORIGIN
1 ctggagcatc ccgctctggt gccgctgcag ccggcagaga tggttgagct catgttcccg
61 ctgttgctcc tccttctgcc cttccttctg tatatggctg cgccccaaat caggaaaatg
121 ctgtccagtg gggtgtgtac atcaactgtt cagcttcctg ggaaagtagt tgtggtcaca
181 ggagctaata caggagctcg agtatattta gcttgccggg atgtggaaaa gggggaattg
241 gtggccaaag agatccagac cacgacaggg aaccagcagg tgttggtgcg gaaactggac
301 ctgtctgata ctaagtctat tcgagctttt gctaagggct tcttagctga ggaaaagcac
361 ctccacgttt tgatcaacaa tgcaggagtg atgatgtgtc cgtactcgaa gacagcagat
421 ggctttgaga tgcacatagg agtcaaccac ttgggtcact tcctcctaac ccatctgctg
481 ctagagaaac taaaggaatc agccccatca aggatagtaa atgtgttttc cctcgcacat
541 cacctgggaa ggatccactt ccataacctg cagggcgaga aattctacaa tgcaggcctg
601 gcctactgtc acagcaagct agccaacatc ctcttcaccc aggaactggc ccggagacta
661 aaaggctctg gcgttacgac gtattctgta caccctggca cagtccaatc tgaactggtt
721 cggcactcat ctttcatgag atggatgtgg tggcttttct cctttttcat caagactcct
781 cagcagggag cccagaccag cctgcactgt gccttaacag aaggtcttga gattctaagt
841 gggaatcatt tcagtgactg tcatgtggca tgggtctctg cccaagctcg taatgagact
901 atagcaaggc ggctgtggga cgtcagttgt gacctgctgg gcctcccaat agactaacag
961 gcagtgccag ttggacccaa gagaagactg cagcagacta cacagtactt cttgtcaaaa
1021 tgattctcct tcaaggtttt caaaaccttt agcacaaaga gagcaaaacc ttccagcctt
1081 gcctgcttgg tgtccagtta aaactcagtg tactgccaga ttcgtctaaa tgtctgtcat
1141 gtccagattt actttgcttc tgttactgcc agagttacta gagatatcat aataggataa
1201 gaagaccctc atatgacctg cacagctcat tttccttctg aaagaaacta ctacctagga
1261 gaatctaagc tatagcaggg atgatttatg caaatttgaa ctagcttctt tgttcacaat
1321 tcagttcctc ccaaccaacc agtcttcact tcaagagggc cacactgcaa cctcagctta
1381 acatgaataa caaagactgg ctcaggagca gggcttgccc aggcatggtg gatcaccgga
1441 ggtcagtagt tcaagaccag cctggccaac atggtgaaac cccacctcta ctaaaaattg
1501 tgtatatctt tgtgtgtctt cctgtttatg tgtgccaagg gagtattttc acaaagttca
1561 aaacagccac aataatcaga gatggagcaa accagtgcca tccagtcttt atgcaaatga
1621 aatgctgcaa agggaagcag attctgtata tgttggtaac tacccaccaa gagcacatgg
1681 gtagcaggga agaagtaaaa aaagagaagg agaatactgg aagataatgc acaaaatgaa
1741 gggactagtt aaggattaac tagcccttta aggattaact agttaaggat taatagcaaa
1801 agatattaaa tatgctaaca tagctatgga ggaattgagg gcaagcaccc aggactgatg
1861 aggtcttaac aaaaaccagt gtggcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//