LOCUS BC050438 2148 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae),
mRNA (cDNA clone IMAGE:5770193), with apparent retained intron.
ACCESSION BC050438
VERSION BC050438.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2148)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2148)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: h Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34452692
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2148
/db_xref="H-InvDB:HIT000099196"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5770193"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 460 a 666 c 677 g 345 t
ORIGIN
1 cccggcgcca tcttcccgac cgcgagccgt ccaggtctca gtgctgtgcc ccccccagag
61 cctagaggat gtttcatggg atcccagcca cgccgggcat aggagcccct gggaacaagc
121 cggagctgta tgaggtgagt ggtgggtgcc cacccggccg gcattggcca acagcaaatg
181 cctgtgtggc ctcaccaggg tcctgcagcc cctgttggca ctggcccaca gagcccgctc
241 tctccggcag gaagtgaagt tgtacaagaa cgcccgggag agggagaagt aagtccaggc
301 gcccaggctg tcccaacaca cccatgcgca tctggctgcc ctggggcagc ccctccagac
361 ccaccccaaa ctgaggggtg ggaggacgca gggtcagtct ggggaactgt tcctgaggca
421 ctccaggatg gagcgagagg tgggcagagc gcccgcagtg gcacctccgg gcagggggta
481 gcactctggg ctctaggctt ggcaccccgg ggcctggccc gatagacagg tgtgtcctca
541 ggtacgacaa catggcagag ctgtttgcgg tggtaaagac aatgcaagcc ctggagaagg
601 cctacatcaa ggactgtgtc tcccccagcg agtacactgc agcctgctcc cggctcctgg
661 tccaatacaa agctgccttc aggcaggtcc agggctcaga aatcagctct attgacgaat
721 tctgccgcaa gttccgcgtg agtgcctggt ccttccaccc ccatggggcg agactgtcgg
781 gcatgggtat ggggtgccag agggctctgg ccacctgggg cttgctgtcc tgagagcccc
841 agcacccatg tcacccccaa cagctggact gcccgctggc catggagcgg atcaaggagg
901 accggcccat caccatcaag gacgacaagg gcaacctcaa ccgctgcatc gcagacgtgg
961 tctcggtgcg ccccagcccc cagggcacgt ggttaggaga gccgaggctg cctgctgcag
1021 ctgggcacga gcgtagggtc ctgggcctcc agagctgagc agcactctga cttgctgggc
1081 agaagggaac ccctttaact aggaatgagg ggtgggcagc atgcggggac gcccccaggc
1141 cacctggact cctgtcgggg ggatgagcac agggtgcgtt ctggcggggt cctggcctcg
1201 ggagagagtg tgggtgtggg cccacccttc agttcccaca cagctgtctg ggcagccagg
1261 acctcgttca cccaggaggc ctgcagggtt tgggaacaga gtacagtgag gaggcccaag
1321 tgacagctgt ggctgaggag gggttggggc ccgtgagccg tggggcctcc cgcacccgtg
1381 gacacgcgag cctcatgtgc acacctgccc ccagctcttc atcacggtca tggacaagct
1441 gcgcctggag atccgcgcca tggatgaggt gcgggtattg ggctggcagg gggcctaggc
1501 aggaggggat ggagccggcg tcggggtccc agccgctgtg tgtgtctcag atccagcccg
1561 acctgcgaga gctgatggag accatgcacc gcatgagcca cctcccaccc gactttgagg
1621 gccgccagac ggtcagccag tggtgggtgt ccctcccagc caggcagagc cccgcagtgc
1681 ccgagaccct cccagccagg cggagccccg cagtgcccct gaggccctca gcccccacat
1741 gccctgtgct gcactcccag gctgcagacc ctgagcggca tgtcggcgtc agatgagctg
1801 gacgactcac aggtgcgtca gatgctgttc gacctggagt cagcctacaa cgccttcaac
1861 cgcttcctgc atgcctgagc ccggggcact agcccttgca cagaagggca gagtctgagg
1921 cgatggctcc tggtcccctg tccgccacac aggccgtggt catccacaca actcactgtc
1981 tgcagctgcc tgtctggtgt ctgtctttgg tgtcagaact ttgggggccg ggcccctccc
2041 cacaataaag atgctctccg accttcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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