LOCUS BC050311 4313 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens leucine-rich PPR-motif containing, mRNA (cDNA clone
MGC:48347 IMAGE:4827456), complete cds.
ACCESSION BC050311
VERSION BC050311.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4313)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4313)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: i Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31621304.
FEATURES Location/Qualifiers
source 1..4313
/db_xref="H-InvDB:HIT000099148"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48347 IMAGE:4827456"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4313
/gene="LRPPRC"
/gene_synonym="CLONE-23970"
/gene_synonym="GP130"
/gene_synonym="LRP130"
/db_xref="GeneID:10128"
/db_xref="HGNC:HGNC:15714"
/db_xref="MIM:607544"
CDS 10..4194
/gene="LRPPRC"
/gene_synonym="CLONE-23970"
/gene_synonym="GP130"
/gene_synonym="LRP130"
/codon_start=1
/product="leucine-rich PPR-motif containing"
/protein_id="AAH50311.1"
/db_xref="GeneID:10128"
/db_xref="HGNC:HGNC:15714"
/db_xref="MIM:607544"
/translation="MAALLRSARWLLRAGAAPRLPLSLRLLPGGPGRLHAASYLPAAR
AGPVAGGLLSPARLYAIAAKEKDIQEESTFSSRKISNQFDWALMRLDLSVRRTGRIPK
KLLQKVFNDTCRSGGLGGSHALLLLRSCGSLLPELKLEERTEFAHRIWDTLQKLGAVY
DVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASK
ILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNA
YAEKGDIDHVKQTLEKVEKSELHLMDRDLLQIIFSFSKAGYPQYVSEILEKVTCERRY
IPDAMNLILLLVTEKLEDVALQILLACPVSKEDGPSVFGSFFLQHCVTMNTPVEKLTD
YCKKLKEVQMHSFPLQFTLHCALLANKTDLAKALMKAVKEEGFPIRPHYFWPLLVGRR
KEKNVQGIIEILKGMQELGVHPDQETYTDYVIPCFDSVNSARAILQENGCLSDSDMFS
QAGLRSEAANGNLDFVLSFLKSNTLPISLQSIRSSLLLGFRRSMNINLWSEITELLYK
DGRYCQEPRGPTEAVGYFLYNLIDSMSDSEVQAKEEHLRQYFHQLEKMNVKIPENIYR
GIRNLLESYHVPELIKDAHLLVESKNLDFQKTVQLTSSELESTLETLKAENQPIRDVL
KQLILVLCSEENMQKALELKAKYESDMVTGGYAALINLCCRHDKVEDALNLKEEFDRL
DSSAVLDTGKYVGLVRVLAKHGKLQDAINILKEMKEKDVLIKDTTALSFFHMLNGAAL
RGEIETVKQLHEAIVTLGLAEPSTNISFPLVTVHLEKGDLSTALEVAIDCYEKYKVLP
RIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMVMLYDLFFAFLQTGNYKEAKKIIETP
GIRARSARLQWFCDRCVANNQVETLEKLVELTQKLFECDRDQMYYNLLKLYKINGDWQ
RADAVWNKIQEENVIPREKTLRLLAEILREGNQEVPFDVPELWYEDEKHSLNSSSAST
TEPDFQKDILIACRLNQKKGAYDIFLNAKEQNIVFNAETYSNLIKLLMSEDYFTQAME
VKAFAETHIKGFTLNDAANSRLIITQVRRDYLKEAVTTLKTVLDQQQTPSRLAVTRVI
QALAMKGDVENIEVVQKMLNGLEDSIGLSKMVFINNIALAQIKNNNIDAAIENIENML
TSENKVIEPQYFGLAYLFRKVIEEQLEPAVEKISIMAERLANQFAIYKPVTDFFLQLV
DAGKVDDARALLQRCGAIAEQTPILLLFLLRNSRKQGKASTVKSVLELIPELNEKEEA
YNSLMKSYVSEKDVTSAKALYEHLTAKNTKLDDLFLKRYASLLKYAGEPVPFIEPPES
FEFYAQQLRKLRENSS"
BASE COUNT 1366 a 816 c 963 g 1168 t
ORIGIN
1 gttcgagcaa tggcagccct gctgagatcc gcgcgttggt tgctgcgtgc cggggcggcc
61 ccgcgcctcc cgctctccct gcgcctcctc cctggcggcc cgggccggct gcatgccgcc
121 tcctatctgc ccgccgctcg cgccgggccc gtggccggag gactactgag cccagccagg
181 ctgtatgcca ttgctgccaa agaaaaagat attcaagagg agtccacttt ttcttctagg
241 aagatttcca atcagtttga ttgggctcta atgagactag atctttctgt tcgaagaact
301 ggccgcattc caaagaagct tctacaaaaa gtttttaatg atacctgccg ctcaggtggc
361 ctaggtggta gtcatgcctt gcttctacta cgtagttgtg gttctctctt gcctgaacta
421 aagcttgaag agagaacaga atttgctcat aggatatggg acacacttca gaaattaggt
481 gctgtgtatg atgtgagtca ctataatgct ttacttaaag tctatcttca aaatgaatat
541 aaattctcac caactgattt cctggcaaaa atggaggaag caaacattca accaaatcga
601 gtgacatacc agagattgat tgcttcttat tgtaatgtag gagatattga aggtgccagc
661 aagattcttg gatttatgaa aactaaggat ctcccagtta cagaggcagt attcagtgcc
721 cttgtgacag ggcatgccag agctggtgat atggagaatg cagaaaacat tctcacagtg
781 atgagagatg ccggaattga gcctggtcca gacacatacc tcgcattatt gaatgcatat
841 gctgagaagg gcgacattga ccatgttaag cagactctgg agaaggtgga gaagtccgag
901 cttcacctta tggaccgtga tttactgcaa attattttta gcttcagtaa agctgggtat
961 cctcagtatg tctcagaaat tttggaaaaa gttacatgtg aaagaagata tattccagat
1021 gcaatgaacc tcattttact tttagtcact gaaaaattgg aagatgtagc gttgcagatt
1081 ttactagcat gccccgtatc aaaggaagat ggcccaagtg tctttggcag tttcttttta
1141 caacactgtg tgactatgaa tacgcctgtg gagaagctaa cagactactg taagaagtta
1201 aaggaagtcc agatgcactc ctttcctctg cagttcaccc tccattgtgc tttactcgcc
1261 aataaaactg atttggcaaa agccttaatg aaggctgtga aggaggaagg ttttcctatc
1321 agacctcact atttctggcc attgctagtt ggacgtcgga aggaaaaaaa tgttcaaggt
1381 ataattgaaa tcctcaaagg aatgcaagaa ttgggagtac atcctgatca ggaaacatat
1441 acagattatg tgattccatg ctttgatagt gtaaactcag cacgagccat tttgcaggaa
1501 aatggatgtc tgtctgatag tgatatgttt tctcaagctg gattgagaag tgaagcagca
1561 aatgggaact tagactttgt attatcattt ttgaaatcaa atacattgcc catctcgctg
1621 cagtctataa gaagtagcct actgctaggc ttcaggaggt ctatgaatat aaatctttgg
1681 agcgagataa cagaattgtt gtacaaggat ggacgttatt gccaggagcc tcgaggaccg
1741 acggaagctg ttggctattt tctttataac ttgattgaca gcatgagtga ctcagaggta
1801 caggccaagg aggagcattt gagacaatac ttccatcagc tggagaagat gaatgtaaaa
1861 attcctgaaa atatctacag aggcattcgt aatctcctgg aaagctacca tgttcctgaa
1921 ttgattaagg atgctcactt gttggttgag agtaagaatt tagactttca aaaaactgtg
1981 caacttacat catctgaatt ggagtccaca cttgaaacac taaaagctga aaatcaacct
2041 ataagagatg tcctaaagca actcatatta gtgctttgtt cagaagagaa tatgcaaaaa
2101 gcccttgaat tgaaagcaaa atatgaatcc gacatggtta ctggtggcta tgcagcttta
2161 ataaatttat gctgtcgaca tgataaagta gaagatgcct tgaacttgaa agaagaattt
2221 gaccgcttag attcatctgc tgtccttgac accggcaagt atgtaggcct tgtaagagta
2281 ttggcaaagc atggcaagct ccaagatgct attaacattc tgaaggagat gaaagagaag
2341 gatgttctta tcaaagatac aacagccttg tcctttttcc acatgctaaa tggcgcagct
2401 ttaagaggtg aaattgaaac agtaaaacag ttgcatgaag ccatcgtgac tctagggtta
2461 gcagaaccat ccaccaacat aagtttccca ttggtcactg tacacttgga aaagggcgac
2521 ctatctactg ctcttgaggt cgccattgac tgctatgaaa agtataaagt attaccaagg
2581 attcatgatg tcttgtgtaa actggtagag aaaggcgaga ctgatctaat tcagaaagca
2641 atggactttg tgagccaaga acaaggtgaa atggtgatgc tctatgatct cttctttgcc
2701 ttcctacaaa caggaaatta caaagaggcc aagaagatca ttgagactcc agggattaga
2761 gctcgatctg caaggcttca gtggttttgt gacagatgtg ttgcaaataa tcaggttgaa
2821 actctggaaa aattagtgga gctgacacag aagctatttg aatgtgatag agaccagatg
2881 tactacaatc tgctaaaact gtataaaata aacggtgact ggcaaagagc tgatgcagtc
2941 tggaataaaa tccaagaaga aaatgttatt cctcgtgaaa agacattaag attattagca
3001 gaaatcctta gagagggtaa ccaggaagtt ccgtttgacg tacctgagtt gtggtatgaa
3061 gatgaaaaac attccctgaa ttcttcgtca gcctcaacca cagaacctga tttccagaaa
3121 gatatattga ttgcctgccg attgaaccaa aaaaaagggg catatgatat tttcctgaat
3181 gcaaaagagc aaaacattgt gtttaatgct gaaacctaca gcaatctcat taaattactg
3241 atgtcagaag attattttac acaagcaatg gaagtgaaag cattcgcgga gacccacatc
3301 aagggcttca cactgaacga tgctgccaac agccgcctca tcataacgca agttaggcgg
3361 gattatttga aagaggctgt gacaacactg aaaacagtat tggatcagca gcagacccct
3421 tctaggttag cagtgacccg tgtcatccag gcattggcca tgaagggtga tgttgaaaac
3481 atagaagtag ttcagaagat gttaaatgga ctcgaagact ccattggact ttcaaaaatg
3541 gttttcatca ataacattgc tttggctcaa ataaagaata ataacataga tgccgcaata
3601 gaaaacattg aaaatatgct tacttcagag aataaagtca ttgaacccca atacttcggc
3661 ttggcatact tattcagaaa agtaatagag gagcagttgg aaccagcagt tgaaaagata
3721 agcatcatgg cggagagatt ggccaatcag tttgcaattt ataaacctgt cactgatttt
3781 ttccttcaac ttgtggatgc aggcaaggtg gatgatgcca gagctctcct acagagatgt
3841 ggtgcaattg ctgaacaaac cccgattttg ttgttgttcc tccttaggaa ttctaggaaa
3901 caaggaaagg catcaactgt gaaatctgtg ttagaattga ttcctgaatt aaatgaaaag
3961 gaagaagcat acaattccct catgaaaagc tatgtctcag agaaagatgt cacatctgct
4021 aaagcactgt atgaacattt gactgcaaag aatacaaaat tggatgatct gtttctaaag
4081 cgttacgcat ctttgctgaa gtatgctgga gagcctgtcc ctttcattga accccctgaa
4141 agctttgaat tttatgcaca gcagctaaga aaattgaggg aaaactcttc ttgaaataac
4201 caggcgatac tttgttttgt atatatttgt gattctgtgt ctacatgtta ctttgaagta
4261 tatctgaggg aaaaataaat gaaaattttc tttaaaagaa aaaaaaaaaa aaa
//