LOCUS BC050309 3425 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens nerve growth factor receptor (TNFR superfamily, member
16), mRNA (cDNA clone MGC:48326 IMAGE:5263715), complete cds.
ACCESSION BC050309
VERSION BC050309.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3425)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3425)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: o Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505392.
FEATURES Location/Qualifiers
source 1..3425
/db_xref="H-InvDB:HIT000053407"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48326 IMAGE:5263715"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3425
/gene="NGFR"
/gene_synonym="CD271"
/gene_synonym="p75(NTR)"
/gene_synonym="TNFRSF16"
/db_xref="GeneID:4804"
/db_xref="HGNC:HGNC:7809"
/db_xref="MIM:162010"
CDS 126..1409
/gene="NGFR"
/gene_synonym="CD271"
/gene_synonym="p75(NTR)"
/gene_synonym="TNFRSF16"
/codon_start=1
/product="nerve growth factor receptor (TNFR superfamily,
member 16)"
/protein_id="AAH50309.1"
/db_xref="GeneID:4804"
/db_xref="HGNC:HGNC:7809"
/db_xref="MIM:162010"
/translation="MGAGATGRAMDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECC
KACNLGEGVAQPCGANQTVCEPCLDSVTFSDVVSATEPCKPCTECVGLQSMSAPCVEA
DDAVCRCAYGYYQDETTGRCEACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANH
VDPCLPCTVCEDTERQLRECTRWADAECEEIPGRWITRSTPPEGSDSTAPSTQEPEAP
PEQDLIASTVAGVVTTVMGSSQPVVTRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWN
SCKQNKQGANSRPVNQTPPPEGEKLHSDSGISVDSQSLHDQQPHTQTASGQALKGDGG
LYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWAT
QDSATLDALLAALRRIQRADLVESLCSESTATSPV"
BASE COUNT 689 a 1105 c 1033 g 598 t
ORIGIN
1 agcgcgagcc gagccgcggc cagctccggc gggcaggggg ggcgctggag cgcagcgcag
61 cgcagcccca tcagtccaca aagcggaccg agctggaagt cgagcgctgc cgcgggaggc
121 gggcgatggg ggcaggtgcc accggccgcg ccatggacgg gccgcgcctg ctgctgttgc
181 tgcttctggg ggtgtccctt ggaggtgcca aggaggcatg ccccacaggc ctgtacacac
241 acagcggtga gtgctgcaaa gcctgcaacc tgggcgaggg tgtggcccag ccttgtggag
301 ccaaccagac cgtgtgtgag ccctgcctgg acagcgtgac gttctccgac gtggtgagcg
361 cgaccgagcc gtgcaagccg tgcaccgagt gcgtggggct ccagagcatg tcggcgccat
421 gcgtggaggc cgacgacgcc gtgtgccgct gcgcctacgg ctactaccag gatgagacga
481 ctgggcgctg cgaggcgtgc cgcgtgtgcg aggcgggctc gggcctcgtg ttctcctgcc
541 aggacaagca gaacaccgtg tgcgaggagt gccccgacgg cacgtattcc gacgaggcca
601 accacgtgga cccgtgcctg ccctgcaccg tgtgcgagga caccgagcgc cagctccgcg
661 agtgcacacg ctgggccgac gccgagtgcg aggagatccc tggccgttgg attacacggt
721 ccacaccccc agagggctcg gacagcacag cccccagcac ccaggagcct gaggcacctc
781 cagaacaaga cctcatagcc agcacggtgg caggtgtggt gaccacagtg atgggcagct
841 cccagcccgt ggtgacccga ggcaccaccg acaacctcat ccctgtctat tgctccatcc
901 tggctgctgt ggttgtgggt cttgtggcct acatagcctt caagaggtgg aacagctgca
961 agcagaacaa gcaaggagcc aacagccggc cagtgaacca gacgccccca ccagagggag
1021 aaaaactcca cagcgacagt ggcatctccg tggacagcca gagcctgcat gaccagcagc
1081 cccacacgca gacagcctcg ggccaggccc tcaagggtga cggaggcctc tacagcagcc
1141 tgcccccagc caagcgggag gaggtggaga agcttctcaa cggctctgcg ggggacacct
1201 ggcggcacct ggcgggcgag ctgggctacc agcccgagca catagactcc tttacccatg
1261 aggcctgccc cgttcgcgcc ctgcttgcaa gctgggccac ccaggacagc gccacactgg
1321 acgccctcct ggccgccctg cgccgcatcc agcgagccga cctcgtggag agtctgtgca
1381 gtgagtccac tgccacatcc ccggtgtgag cccaaccggg gagcccccgc cccgccccac
1441 attccgacaa ccgatgctcc agccaacccc tgtggagccc gcacccccac cctttggggg
1501 gggcccgcct ggcagaactg agctcctctg ggcaggacct cagagtccag gccccaaaac
1561 cacagccctg tcagtgcagc ccgtgtggcc ccttcacttc tgaccacact tcctgtccag
1621 agagagaagt gcccctgctg cctccccaac cctgcccctg ccccgtcacc atctcaggcc
1681 acctgccccc ttctcccaca ctgctaggtg ggccagccac tcccaccaca gcaggtgtca
1741 tatatggggg gccaacacca gggatggtac tagggggaag tgacaaggcc ccagagactc
1801 agagggagga atcgaggaac cagagccatg gactctacac tgtgaacttg gggaacaagg
1861 gtggcatccc agtggcctca accctccctc agcccctctt gccccccacc ccagcctaag
1921 atgaagagga tcggaggctt gtcagagctg ggaggggttt tcgaagctca gcccaccccc
1981 ctcattttgg atataggtca gtgaggccca gggagaggcc atgattcgcc caaagccaga
2041 cagcaacggg gaggccaagt gcaggctggc accgccttct ctaaatgagg ggcctcaggt
2101 ttgcctgagg gcgaggggag ggtggcaggt gaccttctgg gaaatggctt gaagccaagt
2161 cagctttgcc ttccacgctg tctccagacc cccacccctt ccccactgcc tgcccacccg
2221 tggagatggg atgcttgcct agggcctggt ccatgatgga gtcaggtttg gggttcgtgg
2281 aaagggtgct gcttccctct gcctgtcact ctcaggcatg cctgtgtgac atcagtggca
2341 tggctccagt ctgctgccct ccatcccgac atggacccgg agctaacact ggcccctaga
2401 atcagcctag gggtcaggga ccaaggaccc ctcaccttgc aacacacaga cacacgcaca
2461 cacacacaca ggaggagaaa tctcactttt ctccatgagt tttttctctt gggctgagac
2521 tggatactgc ccggggcagc tgccagagaa gcatcggagg aaattgaggt ctgctcggcc
2581 gtcttcactc gcccccgggt ttggcgggcc aaggactgcc gaccgaggct ggagctggcg
2641 tctgtcttca agggcttaca cgtggaggaa tgctccccca tcctcccctt ccctgcaaac
2701 atggggttgg ctgggcccag aaggttgcga tgaagaaaag cgggccagtg tgggaatgcg
2761 gcaagaagga attgacttcg actgtgacct gtggggattt ctcccagctc tagacaaccc
2821 tgcaaaggac tgttttttcc tgagcttggc cagaaggggg ccatgaggcc tcagtggact
2881 ttccaccccc tccctggcct gttctgtttt gcctgaagtt ggaatgagtg tggctcccct
2941 ctatttagca tgacaagccc caggcaggct gtgcgctgac aaccaccgct ccccagccca
3001 gggttccccc agccctgtgg aagggactag gagcactgta gtaaatggca attctttgac
3061 ctcaacctgt gatgagggga ggaaactcac ctgctggccc ctcacctggg cacctgggga
3121 gtgggacaga gtctgggtgt atttattttc ctccccagca ggtggggagg gggtttgggg
3181 gcttgcaagt atgttttagc atgtgtttgg ttctggggcc cctttttact ccccttgagc
3241 tgagatggaa cccttttggc ccccgagctg ggggccatga gctccagacc cccagcaacc
3301 ctcctatcac ctcccctcct tgcctcctgt gtaatcattt ctttggccct cctgaaactt
3361 acacacaaaa cgttaagtga tgaacattaa atagcaaaga aagaaaaata aaaaaaaaaa
3421 aaaaa
//