LOCUS BC050062 3709 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, E, mRNA
(cDNA clone MGC:48280 IMAGE:5274802), complete cds.
ACCESSION BC050062
VERSION BC050062.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3709)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3709)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: e Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40805849.
FEATURES Location/Qualifiers
source 1..3709
/db_xref="H-InvDB:HIT000053390"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48280 IMAGE:5274802"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3709
/gene="PTPRE"
/gene_synonym="HPTPE"
/gene_synonym="PTPE"
/gene_synonym="R-PTP-EPSILON"
/db_xref="GeneID:5791"
/db_xref="MIM:600926"
CDS 359..2461
/gene="PTPRE"
/gene_synonym="HPTPE"
/gene_synonym="PTPE"
/gene_synonym="R-PTP-EPSILON"
/codon_start=1
/product="PTPRE protein"
/protein_id="AAH50062.1"
/db_xref="GeneID:5791"
/db_xref="MIM:600926"
/translation="MEPLCPLLLVGFSLPLARALRGNETTADSNETTTTSGPPDPGAS
QPLLAWLLLPLLLLLLVLLLAAYFFRFRKQRKAVVSTSDKKMPNGILEEQEQQRVMLL
SRSPSGPKKYFPIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENR
EKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDF
WRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRK
FCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVH
CSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALL
EYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPA
NMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVE
DFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISI
RDFLVTLNQPQARQEEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNH
PITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFC
YKVVQDFIDIFSDYANFK"
BASE COUNT 1050 a 921 c 868 g 870 t
ORIGIN
1 agcggcttca ggaacccacg gcctctgcgc gtccccgcga cccttcttcg cgcccggcga
61 agacagccgg gcgccccgga gggcggcggg caggcgcccg ggagatgcgg agcctccgct
121 gcagcgcgat ctgcgcgacc agaccagccc ccccgagtaa gcgcttgcag ccagttgtct
181 agttgtcaga agccgagctc atcagcgggc tcctggtgtc ggcgttctgc tgctggaagg
241 tcagggagtt ccctggaccc cacggaagaa gctgtctcca tgaaggacag ggaccgtgcc
301 gtgaaccttt tattctccca ctgacatgac tatagccttc actttccctc ggtccaccat
361 ggagcccttg tgtccactcc tgctggtggg ttttagcttg ccgctcgcca gggctctcag
421 gggcaacgag accactgccg acagcaacga gacaaccacg acctcaggcc ctccggaccc
481 gggcgcctcc cagccgctgc tggcctggct gctactgccg ctgctgctcc tcctcctcgt
541 gctccttctc gccgcctact tcttcaggtt caggaagcag aggaaagctg tggtcagcac
601 cagcgacaag aagatgccca acggaatctt ggaggagcaa gagcagcaaa gggtgatgct
661 gctcagcagg tcaccctcag ggcccaagaa gtattttccc atccccgtgg agcacctgga
721 ggaggagatc cgtatcagat ccgccgacga ctgcaagcag tttcgggagg agttcaactc
781 attgccatct ggacacatac aaggaacttt tgaactggca aataaagaag aaaacagaga
841 aaaaaacaga tatcccaaca tccttcccaa tgaccattct agggtgattc tgagccaact
901 ggatggaatt ccctgttcag actacatcaa tgcttcctac atagatggtt acaaagagaa
961 gaataaattc atagcagctc aaggtcccaa acaggaaacg gttaacgact tctggagaat
1021 ggtctgggag caaaagtctg cgaccatcgt catgttaaca aacttgaaag aaaggaaaga
1081 ggaaaagtgc catcagtact ggcccgacca aggctgctgg acctatggaa acatccgggt
1141 gtgcgtggag gactgcgtgg ttttggtcga ctacaccatc cggaagttct gcatacagcc
1201 acagctcccc gacggctgca aagcccccag gctggtctca cagctgcact tcaccagctg
1261 gcccgacttc ggagtgcctt ttacccccat tgggatgctg aagttcctca agaaagtaaa
1321 gacgctcaac cccgtgcacg ctgggcccat cgtggtccac tgtagcgcgg gcgtgggccg
1381 gacgggcacc ttcattgtga tcgatgccat gatggccatg atgcacgcgg agcagaaggt
1441 ggatgtgttt gaatttgtgt ctcgaatccg taatcagcgc cctcagatgg ttcaaacgga
1501 tatgcagtac acgttcatct accaagcctt actcgagtac tacctctacg gggacacaga
1561 gctggacgtg tcctcactgg agaagcacct gcagaccatg cacggcacca caacccactt
1621 cgacaagatc gggctggagg aggagttcag gaaattgaca aatgtccgga tcatgaagga
1681 gaacatgagg acgggcaact tgccggcaaa catgaagaag gccagggtca tccagatcat
1741 cccgtatgac ttcaaccgag tgatcctttc catgaaaagg ggtcaagaat acacagacta
1801 catcaacgca tccttcatag acggctaccg acagaaggac tatttcatcg ccacccaggg
1861 gccactggca cacacggttg aggacttctg gaggatgatc tgggaatgga aatcccacac
1921 tatcgtgatg ctgacggagg tgcaggagag agagcaggat aaatgctacc agtattggcc
1981 aaccgagggc tcagttactc atggagaaat aacgattgag ataaagaatg ataccctttc
2041 agaagccatc agtatacgag actttctggt cactctcaat cagccccagg cccgccagga
2101 ggagcaggtc cgagtagtgc gccagtttca cttccacggc tggcctgaga tcgggattcc
2161 cgccgagggc aaaggcatga ttgacctcat cgcagccgtg cagaagcagc agcagcagac
2221 aggcaaccac cccatcaccg tgcactgcag tgccggagct gggcgaacag gtacattcat
2281 agccctcagc aacattttgg agcgagtaaa agccgagggg cttttagatg tatttcaagc
2341 tgtgaagagt ttacgacttc agagaccaca tatggtgcaa accctggaac agtatgaatt
2401 ctgctacaaa gtggtacaag attttattga tatattttct gattatgcta atttcaaatg
2461 aagattcctg ccttaaaata ttttttaatt taatggtcag tatattttgt aaaaatcatg
2521 ttaatttatt tcatagttga cattaatatc ttccctaatt tctttgtata tattttgtta
2581 tgccttaaag gccacctgct atacagttgt taaatcttaa atatgctttt taaaaattgg
2641 aataatgtat taaggtcaaa taatatccca taaaatatat atttctgcta atattagtaa
2701 atatcttaat ttttcattag attcatatca tttaatttca catattcaac acctttaaat
2761 gttgtaatct taatatgcga agtgtgcctc tgcaagatac taacacaaag ctcatgttaa
2821 gaaaacagtt gaggactcag aagtcagttg aaaatgcact ttcctaacag tgaattcaca
2881 accctgaaca gcagcatttt tggaaggcaa actgttcgtg atggtacaat gtaaatgggg
2941 acttctgtaa agttctcagt ttcggtccat gtggtttatc tttacatttt gaagatcaaa
3001 gaagtcttta caacctgaat ccaggtctaa aacacactag agtagctggt gactataaat
3061 aatatttaaa aatgctgtgt atacaccatc aagactgtgt ctacactatc ttggctgaac
3121 gagaagagat gtaaatgctg ggtggtcccg ttgacccacg gcgttgggta caacaaaacc
3181 agccatcgga gttacacccc aaagcaccat ttgctgtcca gctgcctgtc gtttggccca
3241 gaccaccctc agaaaaaaac cagctgcctc tcccattctc ccctcccgtt ctgccacagc
3301 ggcctgggct ggtccagtgc tatgcctgga ggctcaacac aaaacttccc atccaaacat
3361 tcagatgaac tgagcgtctt acacacggag tacagaggag cacacattgg gatagaaaca
3421 gtagaataac cacgggcaat taaactttaa attttctgag cagcattttg gtatttaaac
3481 atttcttgta aaaagctgag acagtttgta agaaaagaat ccttaaaatc tagatttata
3541 ccatttttta aagtcccacc tttcaatgtt taataaaaca aaaagaaatc cttaatctaa
3601 aagctaaatt atttttgaat ggaaatacta ctgagaccat tgacactgga taacagtaat
3661 gatcccatta ccagataaga ttgactgatg gggaaaaaaa aaaaaaaaa
//