LOCUS BC049838 4396 bp mRNA linear HUM 22-APR-2003
DEFINITION Homo sapiens programmed cell death 11, mRNA (cDNA clone
IMAGE:5535193), partial cds.
ACCESSION BC049838
VERSION BC049838.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4396)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4396)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: o Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..4396
/db_xref="H-InvDB:HIT000099088"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5535193"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>4396
/gene="PDCD11"
/gene_synonym="ALG-4"
/gene_synonym="KIAA0185"
/db_xref="GeneID:22984"
CDS 89..>4396
/gene="PDCD11"
/gene_synonym="ALG-4"
/gene_synonym="KIAA0185"
/codon_start=1
/product="PDCD11 protein"
/protein_id="AAH49838.1"
/db_xref="GeneID:22984"
/translation="MANLEESFPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKR
KKSQKGPAKTKKLKIEKRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISL
PNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITD
RGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLL
KAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLN
NLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCV
HPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLA
YARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDI
EPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVL
LCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQ
GLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAG
HSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHW
LQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIK
DYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR
LSDCGLGDLAITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEV
LEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQDL
VNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQV
GQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKK
HTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTTKLKVGKTV
TARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQY
QAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALR
ATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFH
MSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKSKVEDPEINSIQD
IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLT
ARVLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKEKKKKK
"
BASE COUNT 1147 a 1078 c 1190 g 981 t
ORIGIN
1 tgggtatcct ggtctccgcg tgtgtgagta ccgcggcgcg aggttagtgg tagctgggtg
61 cagacgccgt ggcgctggag acccaaacat ggcaaacctg gaagaaagct tcccccgagg
121 aggtacaaga aagatccaca aaccagagaa agctttccag cagtcagttg aacaagacaa
181 cttatttgat atttctactg aagagggatc caccaaaaga aaaaagagcc agaaggggcc
241 agcaaaaaca aaaaagttga aaatcgaaaa gagagaaagc agcaagtccg caagagagaa
301 gtttgaaatc cttagtgttg agtccctgtg tgagggaatg cgtattttgg gttgcgtgaa
361 agaggtgaat gaactggaac tggtgattag tctccccaat ggcctccagg gctttgtgca
421 agtcactgaa atctgtgatg cctacaccaa aaagctgaat gagcaggtga cacaagaaca
481 acctctgaag gacctacttc acttgcctga acttttctca cctggaatgc tggtaagatg
541 tgtggtgagc agtctgggca tcacagacag gggcaagaag agtgtcaagc tgtctctgaa
601 ccccaaaaat gtcaacagag tgctgagtgc tgaggccctg aagcctggca tgctacttac
661 aggtaccgta tccagcctgg aagaccatgg ctacctagtg gacattggtg ttgatgggac
721 cagagctttt ctgccactgc tgaaagccca ggagtacatc agacagaaga acaaaggtgc
781 taaactaaag gtgggtcagt acctgaactg cattgttgaa aaggtgaaag gcaacggagg
841 agttgttagt ctgtctgttg gtcactcaga ggtttctacg gccattgcta ctgaacagca
901 gagctggaac cttaataact tgctaccagg actggtggtc aaagctcagg tacagaaggt
961 gactccattt ggccttacgc taaacttcct cacattcttc acgggcgtgg ttgactttat
1021 gcacctggat cccaagaaag ctggaacata tttctcaaat caggcagtga gggcctgcat
1081 cctttgcgtc catcctcgaa ccagagttgt gcacctgagc ctgcgcccca tcttcctaca
1141 gcctggacgc ccactcaccc gactctcttg ccagaacctt ggagcagtgc tggatgatgt
1201 tcctgtccag ggttttttca aaaaggctgg ggccaccttt aggctgaagg atggggttct
1261 ggcctatgcc cggctcagcc atctctctga ttctaagaac gtcttcaatc ctgaggcctt
1321 caagccaggg aacactcaca agtgtagaat tattgactac agccaaatgg atgaactggc
1381 cttgctctct ctacgaacgt ctattattga agctcagtac cttagatatc atgacatcga
1441 acctggggca gtggtaaagg gcacagtgct aaccataaag tcatatggga tgctggtgaa
1501 ggtgggcgag cagatgaggg gcctggtacc tcccatgcac ctggctgaca tcctgatgaa
1561 gaatccggag aagaagtacc acatcgggga tgaggtcaag tgccgggttt tgctttgtga
1621 ccctgaagcc aagaagctga tgatgaccct gaaaaaaacc ctgattgagt ccaaactacc
1681 tgtcattacc tgctatgccg atgccaagcc tggtctgcag acacatggct tcatcatcag
1741 ggtcaaggac tatggctgca ttgtgaagtt ctacaacaat gtgcagggac tggtgcccaa
1801 gcatgagctc agtactgagt atatccctga cccggagaga gttttttaca ctggccaggt
1861 ggtgaaggtt gtcgtattga actgtgagcc atccaaagag aggatgctct tatccttcaa
1921 gctgtcgagt gatccagagc caaagaaaga gcctgcagga cacagtcaga agaaaggaaa
1981 agccattaac attgggcagt tggtagatgt gaaggtttta gagaagacca aagatgggct
2041 ggaggtggct gtcctgcccc acaacatccg tgctttcctc cccacatctc atctgtcgga
2101 ccacgttgcc aacggcccat tgttacatca ttggctccag gcaggtgaca tccttcaccg
2161 agtcctgtgt ctgagccaga gcgaggggcg tgttcttctt tgcaggaagc cagccttggt
2221 ctccacagta gaaggtggcc aggatcccaa gaacttctca gaaatccatc ctggaatgct
2281 gctcattggt tttgtgaaga gcatcaagga ctatggcgtg ttcatccagt tcccctcagg
2341 tcttagcgga ctggccccaa aagctatcat gagtgacaaa tttgtgacct ccacaagtga
2401 ccactttgtt gagggccaga cagtagcggc aaaggtgacc aatgtggatg aggagaagca
2461 gcggatgctg ctgtcactgc ggctgtcgga ctgtggtctg ggggacttgg ctatcaccag
2521 cctcctcctc ctgaatcagt gcctggagga gctgcagggc gtgcgcagcc ttatgagcaa
2581 ccgagactct gtgttgatcc agacgctggc cgagatgacc ccaggaatgt tccttgacct
2641 agtggtgcag gaggtgttgg aagatggctc tgtggtattc agtgggggtc cagtgcccga
2701 cctggtcctg aaagccagca gataccatcg cgcagggcag gaggtggaat ctgggcagaa
2761 aaagaaggtt gttatcttaa atgttgatct tttgaagttg gaagtgcacg tttcccttca
2821 ccaggacttg gtgaatagaa aagctagaaa gctgaggaaa ggcagcgaac accaggcgat
2881 tgtgcagcac ttggagaagt cctttgccat tgcctccttg gtagagacgg gccacctggc
2941 agctttctcc ctgacctctc acctcaacga caccttccgc tttgactcag agaaattgca
3001 ggtgggacag ggtgtctccc taaccctcaa gaccacagaa ccaggagtga ctggccttct
3061 tttggctgtg gaggggccgg ctgccaagag gaccatgagg ccgacccaga aggactctga
3121 gacagttgat gaggatgaag aagtggatcc agctctgact gtagggacca taaagaagca
3181 caccctctcc atcggggaca tggtcacagg gactgtcaag tccattaagc ctacccatgt
3241 ggttgtgact ctggaagatg gcattattgg ctgtatccat gcctcccaca ttctagatga
3301 tgttccagag ggcacctctc ctactaccaa gctgaaggtt gggaagacgg tcactgcccg
3361 agtgattggc gggcgagaca tgaagacatt caagtatctc ccaataagtc accccagatt
3421 cgttcgaacc atcccggagc tgagtgttcg gccaagtgag ctggaggatg gccacactgc
3481 tcttaacact cactctgtta gccccatgga gaagattaaa cagtaccagg ccggccagac
3541 tgttacttgc ttcttaaaga aatacaatgt ggtgaagaaa tggcttgagg tggagattgc
3601 cccagacatc cgggggagaa ttcccttatt gctcacttct ctgagcttca aggttctgaa
3661 gcatccagat aagaagttcc gggttggcca ggccctgagg gccaccgttg ttggcccaga
3721 ttcctccaag accctcttat gtctgtccct cacaggtcct cacaagcttg aggaagggga
3781 agtggccatg ggccgagtgg tgaaggtgac tcccaacgag gggctgaccg tctccttccc
3841 ctttgggaag ataggaacag tcagtatatt tcacatgagt gactcctact ccgagacgcc
3901 cctggaagac ttcgtccccc agaaggttgt cagatgttac atcctgtcca ctgcagacaa
3961 cgtattgact ttgtcgctgc gatcatccag aacaaacccg gagacgaaaa gcaaagtaga
4021 agatccagag attaactcca tccaggacat taaggaaggg cagcttctga ggggctatgt
4081 agggtccatc cagccacacg gtgtgttctt tcgccttggc ccctccgttg tgggtttggc
4141 tcggtactcc catgtctccc agcacagccc gtccaagaaa gccctttata acaaacacct
4201 ccctgaaggg aagctgctca cagccagggt cctacgcctt aaccaccaga agaacctggt
4261 agagctgtct ttcctccccg gagacactgg gaagccagac gtgctttctg cttccttgga
4321 agggcaactt acaaagcaag aggagaggaa aacagaggct gaggagagag accaaaaaga
4381 gaaaaaaaaa aaaaaa
//