LOCUS BC049217 2260 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, mRNA (cDNA
clone IMAGE:5500425), partial cds.
ACCESSION BC049217
VERSION BC049217.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2260)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2260)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: n Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13514830.
FEATURES Location/Qualifiers
source 1..2260
/db_xref="H-InvDB:HIT000099067"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5500425"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2260
/gene="DDX10"
/gene_synonym="HRH-J8"
/db_xref="GeneID:1662"
/db_xref="MIM:601235"
CDS 26..>2260
/gene="DDX10"
/gene_synonym="HRH-J8"
/codon_start=1
/product="DDX10 protein"
/protein_id="AAH49217.1"
/db_xref="GeneID:1662"
/db_xref="MIM:601235"
/translation="MGKTANSPGSGARPDPVRSFNRWKKKHSHRQNKKKQLRKQLKKP
EWQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL
ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV
LRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQM
LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV
HEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFC
RLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDC
PEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDV
QKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLGLAVAP
RVRFLQKMQKQPTKELVRSQADKVIEPRAPSLTNDEVEEFRAYFNEKMSILQKGGKRL
EGTEHRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPTQFL
DRDEEEEDADFLKVKRHNVFGLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNF
KVNKKITFTDEGELVQQWPQMQKSAIKDAEEDDDTGGINLHKAKERLQEEDKFDKEEY
KKKKK"
misc_feature 167..1579
/gene="DDX10"
/gene_synonym="HRH-J8"
/note="SrmB; Region: Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and
biogenesis]"
/db_xref="CDD:COG0513"
BASE COUNT 773 a 435 c 528 g 524 t
ORIGIN
1 ccgagctgtc gccgccgccg ccgcaatggg caaaacggcc aactctccgg gttcgggagc
61 ccgacccgac ccggtgcgga gcttcaatcg ctggaagaaa aaacacagcc ataggcagaa
121 caaaaagaag cagttgagga agcaactgaa gaaacccgaa tggcaggtcg agcgcgagag
181 tatcagccgc ctcatgcaga actatgaaaa gataaatgta aatgaaatca caagattttc
241 agattttccc ttgtccaaaa aaacattgaa aggtttgcaa gaagctcagt accgtttggt
301 gactgagata cagaagcaga ccattggatt ggctttgcaa ggtaaagatg tacttggagc
361 ggccaaaact ggatctggca agactctggc ttttcttgtt ccagtgctgg aagccttata
421 tcgtctgcaa tggacttcaa cagatgggct gggggttctc ataatatcac ctacgagaga
481 actggcctat cagacctttg aggttctccg aaaagtagga aagaatcatg acttctcagc
541 tggtctcatc attggtggaa aggatctaaa acacgaagct gagaggatca acaacataaa
601 tatactcgtg tgcacaccag gtcggcttct tcaacacatg gatgaaacag tatcttttca
661 tgctaccgac ctccaaatgt tagttcttga tgaagcagat agaatcttgg atatgggctt
721 tgctgatacc atgaatgctg ttattgaaaa tctccccaag aaacgtcaga ctttactttt
781 ctcagcaaca caaactaaat ctgtaaagga ccttgcacgc ttgagtttga aaaaccctga
841 gtatgtctgg gttcatgaaa aagcaaaata tagcacccct gccactttgg aacagaacta
901 catagtctgt gagctgcagc aaaaaataag tgtgctgtat tcctttttga gaagccatct
961 gaagaagaag agcattgtat ttttttccag ttgcaaagag gtccagtatc tgtaccgagt
1021 gttttgccgg ctacgtcctg gtgtttctat ccttgcactc catggtcgac agcagcaaat
1081 gagaagaatg gaagtctata atgagtttgt ccgtaagaga gctgcagtac tctttgctac
1141 tgatattgca gccaggggtc tggatttccc ggccgtgaat tgggttcttc agtttgattg
1201 tcctgaggat gccaacacat atattcacag agcaggtaga actgccaggt acaaagagga
1261 tggtgaagct ttgctaattt tgctaccctc agaaaaagct atggtgcagc agcttcttca
1321 gaagaaagta cctgtgaagg aaatcaaaat caatccagaa aaacttatag atgtccagaa
1381 aaaattggaa tctattttag ctcaagatca agatttaaaa gaaagagctc aaaggtgttt
1441 cgtctcctat gtacgatctg tatatctgat gaaggataaa gaagtatttg atgtgagcaa
1501 gttacctata cctgaatatg ccctgtctct tggtcttgct gtggcaccac gcgtaagatt
1561 tcttcagaaa atgcagaaac aacccaccaa agaattggta aggagccaag ccgataaagt
1621 aattgagcca agggctccct ccctcaccaa tgacgaagtg gaagaattta gagcctactt
1681 caatgagaaa atgtccatcc ttcaaaaagg tggaaaaaga ctcgaaggga cagagcacag
1741 acaggataat gatactggta atgaagaaca ggaagaagaa gaagacgatg aagaagaaat
1801 ggaagagaaa ctggcaaaag caaaaggatc tcaagcccca tctcttccta acaccagtga
1861 ggcacagaag atcaaggaag ttcctacaca gttcttggac agagatgagg aggaagaaga
1921 tgctgatttc ttgaaggtga agcggcataa tgtgtttgga ttggacctta aagacgagaa
1981 aacattacag aagaaagaac cttctaaatc cagcatcaag aaaaaaatga ccaaagttgc
2041 agaagcaaaa aaagtaatga agagaaattt taaagtgaat aagaagataa catttactga
2101 tgaaggggag ttggttcagc agtggccaca aatgcagaaa tctgccatca aggatgctga
2161 ggaagatgat gacacaggtg gtatcaactt acataaagca aaggaaagac ttcaggaaga
2221 ggacaaattt gacaaagaag aatataaaaa aaaaaaaaaa
//