LOCUS BC047932 2214 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae),
mRNA (cDNA clone MGC:49835 IMAGE:5753632), complete cds.
ACCESSION BC047932
VERSION BC047932.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2214)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2214)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: h Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17865806.
FEATURES Location/Qualifiers
source 1..2214
/db_xref="H-InvDB:HIT000053280"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49835 IMAGE:5753632"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2214
/gene="VPS4A"
/gene_synonym="FLJ22197"
/gene_synonym="SKD1"
/gene_synonym="SKD2"
/gene_synonym="VPS4"
/gene_synonym="VPS4-1"
/db_xref="GeneID:27183"
/db_xref="HGNC:HGNC:13488"
/db_xref="MIM:609982"
CDS 107..1420
/gene="VPS4A"
/gene_synonym="FLJ22197"
/gene_synonym="SKD1"
/gene_synonym="SKD2"
/gene_synonym="VPS4"
/gene_synonym="VPS4-1"
/codon_start=1
/product="vacuolar protein sorting 4 homolog A (S.
cerevisiae)"
/protein_id="AAH47932.1"
/db_xref="GeneID:27183"
/db_xref="HGNC:HGNC:13488"
/db_xref="MIM:609982"
/translation="MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIK
YEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGD
NPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPW
RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQ
HKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWV
LDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI
SIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDV
PGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQES"
BASE COUNT 570 a 609 c 613 g 422 t
ORIGIN
1 cgcccaccgc cgggcttccc gcgccggacc cagtacctcg gctccccggg gccggaccga
61 ggccgcaagc agcgccgcgg ggtgtggggc ggacccagga gatgaaatga caacgtcaac
121 cctccagaaa gccattgatc tggtgacgaa agccacagag gaggacaaag ccaagaacta
181 cgaggaggcg ctgcggctgt accagcatgc ggtggagtac ttcctccacg ctatcaagta
241 tgaggcccac agcgacaagg ccaaggagag cattcgagcc aagtgcgtgc agtacctaga
301 ccgggccgag aagctgaagg attatttacg aagcaaagag aaacacggca agaagccagt
361 caaagagaac cagagtgagg gcaagggcag tgacagtgac agtgaagggg ataatccgga
421 gaaaaagaaa ctgcaagaac agctgatggg tgccgtcgtg atggagaagc ccaacatacg
481 gtggaacgac gtggccgggc tggagggggc caaggaggcc ctcaaagaag ctgtcatttt
541 gccaatcaaa ttcccacact tgttcacagg caagcgcacc ccctggcggg ggattctgct
601 gttcggaccc cctggcacag ggaaatccta cctggccaaa gccgtggcaa cagaggccaa
661 caactccacc ttcttctctg tgtcctcctc agatctgatg tccaagtggc tgggggagag
721 tgaaaagctg gtcaagaacc tgtttgagct ggccaggcag cacaagccct ccatcatctt
781 catcgatgag gtggattccc tctgcgggtc ccgaaatgaa aatgagagtg aggccgcccg
841 gaggatcaaa acggagttct tggtccagat gcagggggtg gggaataaca atgatgggac
901 tctggttctt ggagccacaa acatcccatg ggtgttggat tcggccatca ggaggaggtt
961 tgaaaaacga atttatatcc ccttgccgga ggaagctgcc cgcgcccaga tgttccggtt
1021 gcatctcggg agcactcccc acaacctcac ggatgcaaac atccacgagc tggcccggaa
1081 gacggaaggc tactcgggcg cggacatcag catcatcgtg cgggactctc tcatgcagcc
1141 cgtgaggaag gtgcagtcgg ccacacactt caaaaaggtc tgtggcccct ctcgcaccaa
1201 ccccagcatg atgattgatg acctcctgac tccatgctca ccaggggacc caggagccat
1261 ggagatgact tggatggatg tccctgggga caaactctta gagcctgtgg tttgcatgtc
1321 ggacatgctg cggtctctgg ccaccacccg gcccacggtg aatgcagacg acctcctgaa
1381 agtgaagaaa ttctcagagg actttgggca agagagttaa aagctgcttc acttgggcaa
1441 tggtgaaggt gggaggttga ttggggcaaa tccaggcact ccccatgtca acagccagac
1501 agggctccag ggcttgtccc agtcaataca gagttccctc tgctgtctgg ccgtctgcca
1561 gggagccaga aggaagggcc ttgcagccac agagacactc cactgccctg gggcacacag
1621 tggacactgc tcttcctact tcctcctctc ctggatgctc atcagctcct tctgcctccc
1681 cccctttttt ttccatcttt tgttccccta aattaatgct gcttggattt tcatcttatt
1741 tataaagata aaatcacctg gaagtgtcaa ggagtggggc ggggtggcgg gggagaagca
1801 gccgtgctgc caggtcaccc agacctccag acagccggct agccccactg cccgttcctt
1861 ttacgcccaa gttttgctcc ttgagagcag attggctgat gcccctgcaa ccccagccca
1921 agctctgcct caaagaccga gtgacataag ccattcccac cctcctaggt tcacatccag
1981 ggctgtgtct tccttggggg aggagatggt gtcgtttaga tcagggtaag gcagtcaggc
2041 gggtgttcac cactgccttt tcttcctctg agcgtgagaa cactgaaccc agccactgcc
2101 cctgggtccc tgtcctggaa atggtctaat aaatcctttt cccttctgga gctaaaaaaa
2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//