LOCUS BC047900 1503 bp mRNA linear HUM 05-NOV-2003
DEFINITION Homo sapiens bromodomain, testis-specific, mRNA (cDNA clone
IMAGE:5169324), partial cds.
ACCESSION BC047900
VERSION BC047900.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1503)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1503)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: c Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502452.
FEATURES Location/Qualifiers
source 1..1503
/db_xref="H-InvDB:HIT000098827"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5169324"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1503
/gene="BRDT"
/gene_synonym="BRD6"
/db_xref="GeneID:676"
/db_xref="MIM:602144"
CDS 115..>1503
/gene="BRDT"
/gene_synonym="BRD6"
/codon_start=1
/product="BRDT protein"
/protein_id="AAH47900.1"
/db_xref="GeneID:676"
/db_xref="MIM:602144"
/translation="MSLPSRQTAIIVNPPPPEYINTKKNGRLTNQLQYLQKVVLKDLW
KHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMF
SNCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQEEQVVGVKERIKKGTQQNIAVSSAK
EKSSPSATEKVFKQQEIPSVFPKTSISPLNVVQGASVNSSSQTAAQVTKGVKRKADTT
TPATSAVKASSEFSPTFTENSVALPPIKENMPKNVLPDSQQQYNVVKTVKVTEQLRHC
SEILKEMLAKKHFSYAWPFYNPVDVNALGLHNYYDVVKNPMDLGTIKEKMDNQEYKDA
YKFAADVRLMFMNCYKYNPPDHEVVTMARMLQDVFETHFSKIPIEPVESMPLCYIKTD
ITETTGRENTNEASSEGNSSDDSEDERVKRLAKLQEQLKAVHQQLQVLSQVPFRKLNK
KKEKSKKKKKKKK"
misc_feature 193..519
/gene="BRDT"
/gene_synonym="BRD6"
/note="BROMO; Region: bromo domain"
/db_xref="CDD:smart00297"
misc_feature 925..1245
/gene="BRDT"
/gene_synonym="BRD6"
/note="BROMO; Region: bromo domain"
/db_xref="CDD:smart00297"
BASE COUNT 532 a 294 c 287 g 390 t
ORIGIN
1 ccctccccga ccccatcaac atcgtgcgac agtccgggca gttgagaagg ccaccccgct
61 tcgtgcctgc agcccaggac atgtacttgt agacaggatt caaagcagtt aagaatgtct
121 ctgccaagtc gacaaacagc tattattgtt aaccctcctc caccagaata tataaatact
181 aagaaaaatg ggcgattgac aaatcaactt cagtatctac aaaaagttgt cctaaaggat
241 ttatggaagc atagtttttc atggcccttt caacgtcctg tggatgctgt gaaactacag
301 ttgcctgatt attataccat tataaaaaac ccaatggatt taaatacaat taagaagcgc
361 ttggagaata aatattatgc gaaggcttca gaatgtatag aagacttcaa tacaatgttc
421 tcaaattgtt atttatataa caagcctgga gatgacattg ttcttatggc acaagctcta
481 gagaagctgt ttatgcagaa attatctcag atgccacaag aagagcaagt tgtgggtgtt
541 aaggaaagaa tcaagaaagg cactcaacag aatatagctg tttcttctgc taaagaaaaa
601 tcatcaccca gcgcaacaga aaaagtattt aagcagcaag aaattccttc tgtatttcct
661 aagacatcta tttctccctt gaacgtggta cagggagctt cagtcaactc cagttcacaa
721 actgcggccc aagttacaaa aggtgtgaag aggaaagcag atacaacaac tcctgcaact
781 tcagcagtta aagcaagtag tgaattttct ccaacattca cagaaaactc agtggcactg
841 ccacctataa aagaaaatat gccaaagaat gttttgccag attctcagca acaatataat
901 gttgtgaaga ctgttaaagt aactgaacaa ttaaggcact gtagtgagat tcttaaagaa
961 atgcttgcaa agaaacattt ttcatatgca tggccctttt ataatcctgt tgacgttaat
1021 gctttgggac tccataacta ctatgacgtt gtcaaaaatc cgatggatct tggaactatt
1081 aaggagaaaa tggataacca agaatataag gatgcataca aatttgcggc agatgttaga
1141 ttaatgttca tgaattgcta caagtacaat cctccagatc acgaagttgt gacaatggca
1201 agaatgcttc aggatgtttt cgaaacgcat ttttcaaaga tcccgattga acctgttgag
1261 agtatgcctt tatgttacat caaaacagat atcacagaaa ccactggtag agagaacact
1321 aatgaagcct cctctgaagg gaactcttct gatgattctg aagatgagcg agttaagcgt
1381 cttgcaaagc ttcaggagca gcttaaagct gtacatcaac agctccaggt tttgtcccaa
1441 gtacctttcc gtaagctaaa taaaaagaaa gagaagtcta aaaaaaaaaa aaaaaaaaaa
1501 aaa
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