LOCUS BC047695 2502 bp mRNA linear HUM 09-MAR-2007
DEFINITION Homo sapiens perforin 1 (pore forming protein), mRNA (cDNA clone
MGC:51909 IMAGE:5752084), complete cds.
ACCESSION BC047695
VERSION BC047695.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2502)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2502)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: e Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45935369.
FEATURES Location/Qualifiers
source 1..2502
/db_xref="H-InvDB:HIT000098757"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51909 IMAGE:5752084"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2502
/gene="PRF1"
/gene_synonym="FLH2"
/gene_synonym="HPLH2"
/gene_synonym="P1"
/gene_synonym="PFP"
/db_xref="GeneID:5551"
/db_xref="HGNC:HGNC:9360"
/db_xref="MIM:170280"
CDS 47..1714
/gene="PRF1"
/gene_synonym="FLH2"
/gene_synonym="HPLH2"
/gene_synonym="P1"
/gene_synonym="PFP"
/codon_start=1
/product="perforin 1 (pore forming protein)"
/protein_id="AAH47695.2"
/db_xref="GeneID:5551"
/db_xref="HGNC:HGNC:9360"
/db_xref="MIM:170280"
/translation="MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLA
GEGVDVTSLRRSGSFPVDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGC
QRHVTRAKVSSTEAVARDAARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQ
KTHQDQYSFSTDTVECRFYSFHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISN
YGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEA
KACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPG
SPGLVDYTLEPLHVLLDSQDPRREALRRALSQYLTDRARWRDCSRPCPPGRQKSPRDP
CQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRT
STVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHEV
RCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQMLLGEPPGNRSGAVW"
BASE COUNT 571 a 756 c 685 g 490 t
ORIGIN
1 ggatatccat ctgtgtagcc gcttctctat acgggattcc agctccatgg cagcccgtct
61 gctcctcctg ggcatccttc tcctgctgct gcccctgccc gtccctgccc cgtgccacac
121 agccgcacgc tcagagtgca agcgcagcca caagttcgtg cctggtgcat ggctggccgg
181 ggagggtgtg gacgtgacca gcctccgccg ctcgggctcc ttcccagtgg acacacaaag
241 gttcctgcgg cccgacggca cctgcaccct ctgtgaaaat gccctacagg agggcaccct
301 ccagcgcctg cctctggcgc tcaccaactg gcgggcccag ggctctggct gccagcgcca
361 tgtaaccagg gccaaagtca gctccactga agctgtggcc cgggatgcgg ctcgtagcat
421 ccgcaacgac tggaaggtcg ggctggacgt gactcctaag cccaccagca atgtgcatgt
481 gtctgtggcc ggctcacact cacaggcagc caactttgca gcccagaaga cccaccagga
541 ccagtacagc ttcagcactg acacggtgga gtgccgcttc tacagtttcc atgtggtaca
601 cactcccccg ctgcaccctg acttcaagag ggccctcggg gacctgcccc accacttcaa
661 cgcctccacc cagcccgcct acctcaggct tatctccaac tacggcaccc acttcatccg
721 ggctgtggag ctgggtggcc gcatatcggc cctcactgcc ctgcgcacct gcgagctggc
781 cctggaaggg ctcacggaca acgaggtgga ggactgcctg actgtcgagg cccaggtcaa
841 cataggcatc cacggcagca tctctgccga agccaaggcc tgtgaggaga agaagaagaa
901 gcacaagatg acggcctcct tccaccaaac ctaccgggag cgccattcgg aagtggttgg
961 cggccatcac acctccatta acgacctgct gttcgggatc caggccgggc ccgagcagta
1021 ctcagcctgg gtaaactcgc tgcccggcag ccctggcctg gtggactaca ccctggaacc
1081 cctgcacgtg ctgctggaca gccaggaccc gcggcgggag gcactgagga gggccctgag
1141 tcagtacctg acggacaggg ctcgctggag ggactgcagc cggccgtgcc caccagggcg
1201 gcagaagagc ccccgagacc catgccagtg tgtgtgccat ggctcagcgg tcaccaccca
1261 ggactgctgc cctcggcaga ggggcctggc ccagctggag gtgaccttca tccaagcatg
1321 gggcctgtgg ggggactggt tcactgccac ggatgcctat gtgaagctct tctttggtgg
1381 ccaggagctg aggacgagca ccgtgtggga caataacaac cccatctggt cagtgcggct
1441 ggattttggg gatgtgctcc tggccacagg ggggcccctg aggttgcagg tctgggatca
1501 ggactctggc agggacgatg acctccttgg cacctgtgat caggctccca agtctggttc
1561 ccatgaggtg agatgcaacc tgaatcatgg ccacctaaaa ttccgctatc atgccaggtg
1621 cttgccccac ctgggaggag gcacctgcct ggactatgtc ccccaaatgc ttctggggga
1681 gcctccagga aaccggagtg gggccgtgtg gtgagaacag tgagcttgga aaggaccagt
1741 atgcttggac tgaaggggtt ctcacagtgg gagccagggc tgtcttcgta ttcccattag
1801 accaagctta tccaacccga ggcccgcatg cggcccagga tggctttgaa tgcggcccaa
1861 cgcaaattcg caaactttct taaaacatta tgagtttctt tttgctattt tttttttttt
1921 tttagctcat cggctatcgt tagtgctagt ggattttaca tgtggcccaa cacaattctt
1981 cttccaacgt ggcccagaga agccaaaaga ttggatacgc atcagacaga tggaaaaggg
2041 agattcagac tgtttttcag ggaggtggct gggtttacac gctaatcccg attcaccctg
2101 tccaaactgc ctaagccctc cgccattctc aagccctgca gtcacagcta cacagatcac
2161 agcttcagcc aggagctggg cagaaggcca agaggctgtt cccaccaggc tgctcagggc
2221 tggtctttta ggacccttcc cttgagccct ctatggtgtg gcaaagcctt cattgcctta
2281 actggagccc catcagctcc agctgctctg tcttctttgc ccacaatgct ttgcccctga
2341 gacaaatgga ggcctgtcct gacctgtctc accatgtaca tagcttgata aagggccaat
2401 aaatatgatg ttatggtgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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