LOCUS BC047673 1916 bp mRNA linear HUM 17-DEC-2007
DEFINITION Homo sapiens N-terminal EF-hand calcium binding protein 3, mRNA
(cDNA clone MGC:51791 IMAGE:5755231), complete cds.
ACCESSION BC047673
VERSION BC047673.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1916)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1916)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: e Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38569414.
FEATURES Location/Qualifiers
source 1..1916
/db_xref="H-InvDB:HIT000053194"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51791 IMAGE:5755231"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1916
/gene="NECAB3"
/gene_synonym="dJ63M2.4"
/gene_synonym="dJ63M2.5"
/gene_synonym="EFCBP3"
/gene_synonym="NIP1"
/gene_synonym="STIP3"
/gene_synonym="XB51"
/db_xref="GeneID:63941"
/db_xref="HGNC:HGNC:15851"
CDS 62..1150
/gene="NECAB3"
/gene_synonym="dJ63M2.4"
/gene_synonym="dJ63M2.5"
/gene_synonym="EFCBP3"
/gene_synonym="NIP1"
/gene_synonym="STIP3"
/gene_synonym="XB51"
/codon_start=1
/product="N-terminal EF-hand calcium binding protein 3"
/protein_id="AAH47673.1"
/db_xref="GeneID:63941"
/db_xref="HGNC:HGNC:15851"
/translation="MACAGLLTVCLLRPPAPQPQPQTPRHPQLAPDPGPAGHTLFQDV
FRRADKNDDGKLSFEEFQNYFADGVLSLGELQELFSGIDGHLTDNLETEKLCDYFSEH
LGVYRPVLAALESLNRAVLAAMDATKLEYERASKVDQFVTRFLLRETVSQLQALQSSL
EGASDTLEAQAHGWRSDAESVEAQSRLCGSRRAGRRALRSVSRSSTWSPGSSDTGRSS
EAEMQWRLQVNRLQELIDQLECKAPRLEPLREEDLAKGPDLHILMAQRQVQVAEEGLQ
DFHRALRCYVDFTGAQSHCLHVSAQKMLDGASFTLYEFWQDEASWRRHQQSPGSKAFQ
RILIDHLRAPDTLTTVFFPASWWIMNNN"
BASE COUNT 360 a 617 c 572 g 367 t
ORIGIN
1 gtccgccgcg gcgtccaggg tcggcagcaa ccgcagccga gcccgagcgg gtggcggcgc
61 catggcgtgc gcggggctgc tcaccgtgtg cctgctccgg ccgcccgcgc cccagcccca
121 gccccagacc ccgcggcacc cccagctcgc gcccgacccg gggcccgccg gacacacgct
181 cttccaggac gttttccgca gagcagacaa gaatgatgat gggaagctct catttgagga
241 attccagaat tactttgccg atggggttct cagcctgggg gagctgcagg aactgttcag
301 cggcattgat gggcatctca ccgacaattt agaaacagaa aaactgtgtg actacttctc
361 agagcacctg ggtgtctacc ggccggtgct ggctgcattg gaatcgctga accgtgcagt
421 gctcgctgcc atggatgcca ccaagctgga gtacgagagg gcctccaaag tggaccagtt
481 tgtgacgcgc ttcctgctgc gggagacggt gagccagctg caagcccttc agagctcgct
541 ggagggggcg tcagataccc tggaggccca ggcccatggc tggcggtcag atgcagagag
601 cgtggaggcg cagagcaggc tctgcggcag ccggcgggca ggacgccgag ccctgaggag
661 tgtcagccgg tcatccacct ggtcccccgg ctcttctgac acagggcgca gctcagaggc
721 cgagatgcag tggcggctcc aggtgaaccg cctccaggag ctcatcgacc agctcgagtg
781 caaggccccc cggctggaac ccctgcgtga agaggacctg gccaaggggc ctgacttgca
841 catcctcatg gcccagaggc aggtccaggt ggcagaggaa ggcctgcagg acttccaccg
901 agccctgcgc tgctatgtgg acttcacagg ggcccagagc cattgtctgc atgtgtccgc
961 ccagaagatg ctggacggtg cctccttcac cctgtatgag ttctggcagg atgaggcctc
1021 ctggagaagg caccagcagt cgcctggcag caaggccttc cagcgcatcc tcatcgacca
1081 cctgcgggcc ccggacaccc tcaccactgt gttcttccca gcctcctggt ggataatgaa
1141 taacaactga gccagacctg cacacgccga gggccccggg accctgcctg cctccctctg
1201 gagccttctg gactggccag cccagcgcaa agaccagggc ttgtctcctc ctggacttgg
1261 gcctggtgga agggctctca gcccagggat cagggactgg gctgcttgct ttctatttat
1321 tattgattta tttatccctg tattttattg tttgtcactt cagcctccaa gctactttgg
1381 tttctgcctg gctcaggaga cctggattct ggtccctgct gtccctgcct ggctgagcga
1441 cccagggcag gtcccgtccc tgtctgggtg ggcctcaggc catctggccg cctagcgagg
1501 gtcctgcttt cttcctgctg tcttgggacc aggcttctgc tcctcctcag ccagcggcag
1561 aagcagggct gatgctcagg gaccccccaa ccctcaaacc ttgcctccga ggctgggcct
1621 gagctgggtg ccccgtcgcc ctcccaggcc actaggctct gactcttcca gcacccatgg
1681 atgtgccaga ggcctctggg ttggtttgca tgtcatttgc atatcgtttg catgccctca
1741 tcccacccat tctcagggca gtatgggaag ccccaaggtg acctggccaa gtagcaataa
1801 tttgggtcca gggtcaccta ttgcccccag aggcctctga accccaggct gggaccccag
1861 cacagaggca ataaaggcag tggtcccttc caaaaaaaaa aaaaaaaaaa aaaaaa
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