LOCUS BC047595 3024 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens adhesion molecule with Ig-like domain 2, mRNA (cDNA
clone MGC:48648 IMAGE:4828334), complete cds.
ACCESSION BC047595
VERSION BC047595.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3024)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3024)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: i Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40556374.
FEATURES Location/Qualifiers
source 1..3024
/db_xref="H-InvDB:HIT000053181"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48648 IMAGE:4828334"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3024
/gene="AMIGO2"
/gene_synonym="ALI1"
/gene_synonym="DEGA"
/db_xref="GeneID:347902"
/db_xref="HGNC:HGNC:24073"
CDS 469..2037
/gene="AMIGO2"
/gene_synonym="ALI1"
/gene_synonym="DEGA"
/codon_start=1
/product="adhesion molecule with Ig-like domain 2"
/protein_id="AAH47595.1"
/db_xref="GeneID:347902"
/db_xref="HGNC:HGNC:24073"
/translation="MSLRVHTLPTLLGAVVRPGCRELLCLLMITVTVGPGASGVCPTA
CICATDIVSCTNKNLSKVPGNLFRLIKRLDLSYNRIGLLDSEWIPVSFAKLNTLILRH
NNITSISTGSFSTTPNLKCLDLSSNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSA
FGGLSQLQKLYLSGNFLTQFPMDLYVGRFKLAELMFLDVSYNRIPSMPMHHINLVPGK
QLRGIYLHGNPFVCDCSLYSLLVFWYRRHFSSVMDFKNDYTCRLWSDSRHSRQVLLLQ
DSFMNCSDSIINGSFRALGFIHEAQVGERLMVHCDSKTGNANTDFIWVGPDNRLLEPD
KEMENFYVFHNGSLVIESPRFEDAGVYSCIAMNKQRLLNETVDVTINVSNFTVSRSHA
HEAFNTAFTTLAACVASIVLVLLYLYLTPCPCKCKTKRQKNMLHQSNAHSSILSPGPA
SDASADERKAGAGKRVVFLEPLKDTAAGQNGKVRLFPSEAVIAEGILKSTRGKSDSDS
VNSVFSDTPFVAST"
BASE COUNT 819 a 656 c 708 g 841 t
ORIGIN
1 ggggtcctgc agcctcccga gtgcggagag gcggggccgc ccgctgccgc ccggctgcct
61 gcgccccctc ccgcggcccc ggctctggga gcggggcgcc ccgcgcgcgg gcacacggcg
121 gccagagcgc cgaggcggta ccttcagcct gcaatgagag gaacccggga gagcccccgg
181 gagccagcga agagcttggc tgctgcgtcc agggctgctg ctgccgccgc ggctgcttga
241 aactcctcaa agttgagagc cggctagagg gtgccgcccg ccgggagccg gagggaaagg
301 aagtcgggag gtgcaagagt gacagacacg gacagacgga cgcgcagacc ttcggaaggc
361 actgcgtagg cagcctcccc ggagcccacg aggctcccca gcaccgttca ctggtgggag
421 gctgagccgg tggaaaagac accgggaaga gactcagagg cgaccataat gtcgttacgt
481 gtacacactc tgcccaccct gcttggagcc gtcgtcagac cgggctgcag ggagctgctg
541 tgtttgctga tgatcacagt gactgtgggc cctggtgcct ctggggtgtg ccccaccgct
601 tgcatctgtg ccactgacat cgtcagctgc accaacaaaa acctgtccaa ggtgcctggg
661 aaccttttca gactgattaa gagactggac ctgagttata acagaattgg gcttctggat
721 tctgagtgga ttccagtatc gtttgcaaag ctgaacaccc taattcttcg tcataacaac
781 atcaccagca tttccacggg cagtttttcc acaactccaa atttgaagtg tcttgactta
841 tcgtccaata agctgaagac ggtgaaaaat gctgtattcc aagagttgaa ggttctggaa
901 gtgcttctgc tttacaacaa tcacatatcc tatctcgatc cttcagcgtt tggagggctc
961 tcccagttgc agaaactcta cttaagtgga aattttctca cacagtttcc gatggatttg
1021 tatgttggaa ggttcaagct ggcagaactg atgtttttag atgtttctta taaccgaatt
1081 ccttccatgc caatgcacca cataaattta gtgccaggaa aacagctgag aggcatctac
1141 cttcatggaa acccatttgt ctgtgactgt tccctgtact ccttgctggt cttttggtat
1201 cgtaggcact ttagctcagt gatggatttt aagaacgatt acacctgtcg cctgtggtct
1261 gactccaggc actcgcgtca ggtacttctg ctccaggata gctttatgaa ttgctctgac
1321 agcatcatca atggttcctt tcgtgcgctt ggctttattc atgaggctca ggtcggggaa
1381 agactgatgg tccactgtga cagcaagaca ggtaatgcaa atacggattt catctgggtg
1441 ggtccagata acagactgct agagccggat aaagagatgg aaaactttta cgtgtttcac
1501 aatggaagtc tggttataga aagccctcgt tttgaggatg ctggagtgta ttcttgtatc
1561 gcaatgaata agcaacgcct gttaaatgaa actgtggacg tcacaataaa tgtgagcaat
1621 ttcactgtaa gcagatccca tgctcatgag gcatttaaca cagcttttac cactcttgct
1681 gcttgcgtgg ccagtatcgt tttggtactt ttgtacctct atctgactcc atgcccctgc
1741 aagtgtaaaa ccaagagaca gaaaaatatg ctacaccaaa gcaatgccca ttcatcgatt
1801 ctcagtcctg gccctgctag tgatgcctcc gctgatgaac ggaaggcagg tgcaggtaaa
1861 agagtggtgt ttttggaacc cctgaaggat actgcagcag ggcagaacgg gaaagtcagg
1921 ctctttccca gcgaggcagt gatagctgag ggcatcctaa agtccacgag ggggaaatct
1981 gactcagatt cagtcaattc agtgttttct gacacacctt ttgtggcgtc cacttaattt
2041 gtgcctatat ttgtatgatg tcataattta atctgttcat atttaacttt gtgtgtggtc
2101 tgcaaaataa acagcaggac agaaattgtg ttgttttgtt ctttgaaata caaccaaatt
2161 ctcttaaaat gattggtagg aaatgaggta aagtacttca gttcctcaat gtgccagaga
2221 aagatggggt tgttttccaa agtttaagtt ctagatcaca atatcttagc ttttagcact
2281 attggtaatt tcagagtagg cccaaaggtg atatgactcc cattgtccct ttatttagga
2341 tattgaaaga aaaaataaac tttatgtatt agtgtccttt aaaaatagac tttgctaact
2401 tactagtacc agagttattt taaagaaaaa cactagtgtc caatttcatt tttaaaagat
2461 gtagaaagaa gaatcaagca tcaattaatt ataaagccta aagcaaagtt agatttgggg
2521 gttattcagc caaaattacc gttttagacc agaatgaata gactacactg ataaaatgta
2581 ctggataatg ccacatccta tatggtgtta tagaaatagt gcaaggaaag tacatttgtt
2641 tgcctgtctt ttcattttgt acattcttcc cattctgtat tcttgtacaa aagatctcat
2701 tgaaaattta aagtcatcat aatttgttgc cataaatatg taagtgtcaa taccaaaatg
2761 tctgagtaac ttcttaaatc cctgttctag caaactaata ttggttcatg tgcttgtgta
2821 tatgtaaatc ttaaattatg tgaactatta aatagaccct actgtactgt gctttggaca
2881 tttgaattaa tgtaaatata tgtaatctgt gacttgatat tttgttttat ttggctattt
2941 aaaaacataa atctaaaatg tcttatgtta tcagattatg ctattttgta taaagcacca
3001 ctgatagcaa aaaaaaaaaa aaaa
//