LOCUS BC047455 2363 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 4, mRNA (cDNA
clone MGC:48304 IMAGE:5298807), complete cds.
ACCESSION BC047455
VERSION BC047455.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2363)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2363)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: k Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9507236.
FEATURES Location/Qualifiers
source 1..2363
/db_xref="H-InvDB:HIT000053138"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48304 IMAGE:5298807"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2363
/gene="DDX4"
/gene_synonym="VASA"
/db_xref="GeneID:54514"
/db_xref="MIM:605281"
CDS 38..2110
/gene="DDX4"
/gene_synonym="VASA"
/codon_start=1
/product="DDX4 protein"
/protein_id="AAH47455.1"
/db_xref="GeneID:54514"
/db_xref="MIM:605281"
/translation="MGDEDWEAEINPHMSSYVPIFEKDRYSGENGDNFNRTPASSSEM
DDGPSRRDHFMKSGFASGRNFGNRDAGECNKRDNTSTMGGFGVGKSFGNRGFSNSRFE
DGDSSGFWRESSNDCEDNPTRNRGFSKRGDNDLDPDECMQRTGGLFGSRRPVLSGTGN
GDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGPKVTYIPPPPP
EDEDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTK
LTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPEC
IIVAPTRELVNKIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRL
MDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATF
PEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDER
TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA
ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVK
VLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRKGKSTLNTAGFSSSQAPN
PVDDESWD"
BASE COUNT 744 a 405 c 557 g 657 t
ORIGIN
1 tggggggagc aagccgcgga gagaacttga agccaccatg ggagatgaag attgggaagc
61 agaaatcaac cctcatatgt cttcctatgt tcccatattt gagaaggata ggtattctgg
121 agaaaatgga gacaatttta acaggactcc agcttcatca tcagaaatgg atgatggacc
181 ttctcgaaga gatcatttca tgaaaagtgg atttgcctct gggcggaatt ttggaaacag
241 agatgctggt gagtgtaata agcgagataa tacatccaca atgggtggtt ttggagttgg
301 aaagagtttt ggaaacagag gtttttcaaa cagcaggttt gaagatggtg atagctctgg
361 tttctggaga gagtctagta atgactgcga agataatcca acacggaaca gagggttttc
421 caagagaggc gataatgact tagacccaga cgaatgtatg cagcgcactg gtggcctttt
481 tggttctaga agaccagtat taagtggcac aggtaatggt gatacttctc aaagcagaag
541 tggcagtgga agtgaacgag gtggttacaa aggtttaaat gaagaagtaa taacaggctc
601 tggaaagaat tcttggaagt cagaagcaga aggaggagaa agtagtgata ctcaaggacc
661 aaaagtgacc tacatacccc ctcctccacc tgaggatgag gactccatct ttgcacatta
721 tcagacaggc ataaacttcg acaaatacga cactattctt gtggaagtgt ctggacatga
781 tgcaccacca gcaattctga cttttgaaga agctaatctc tgtcagacac tgaataacaa
841 cattgctaaa gctggttata ctaagcttac tcctgtgcaa aaatacagta ttcctatcat
901 acttgcagga cgagatttga tggcttgcgc tcaaacaggg tctgggaaga ctgcggcttt
961 tctcctacca attttggctc atatgatgca tgatggaata actgccagtc gttttaaaga
1021 gttgcaggaa ccagagtgta ttattgtagc accaactcga gaattggtca acaagattta
1081 tttggaagcc agaaaatttt cttttgggac ttgtgtaaga gctgttgtta tatatggggg
1141 aacccagctg ggacattcaa ttcgacaaat agtacaaggc tgtaatatat tatgtgctac
1201 tcctggaaga ctgatggata tcataggcaa agaaaagatt ggtctcaaac agatcaaata
1261 cttagttttg gatgaagctg atcgcatgtt ggatatgggt tttggtccag aaatgaagaa
1321 gttaatttct tgcccaggaa tgccatcaaa ggaacagcgc caaaccctta tgttcagtgc
1381 aacttttcca gaggaaattc aaaggttggc tgcagagttt ttaaagtcaa attatctgtt
1441 tgttgctgtt ggacaagtgg gtggagcatg tagagatgtt cagcagaccg ttctccaagt
1501 tggccagttc tcaaaaagag agaagctcgt tgaaattctg cgaaacatag gggatgaaag
1561 aactatggtc tttgttgaaa ctaagaaaaa agcagatttt attgcaactt ttctttgtca
1621 agaaaaaata tcaactacaa gtattcatgg tgatcgggaa cagagagagc gggagcaagc
1681 tcttggagat tttcgctttg gaaagtgccc agttcttgtt gctacttcag tagctgccag
1741 agggctggat attgaaaatg tgcaacatgt tatcaatttt gatcttcctt ctaccattga
1801 tgaatatgtt catcgaattg ggcgtactgg tcgttgtggg aatactggca gagcaatttc
1861 cttttttgat cttgaatcgg ataaccattt agcacagcct ctagtaaaag tattgacaga
1921 tgctcaacag gatgttcctg catggttgga agaaattgcc tttagtacat acattcctgg
1981 cttcagtggt agtacaagag gaaacgtgtt tgcatcagtt gataccagaa agggcaagag
2041 cactttgaac acagctgggt tttcttcttc acaagctccc aatccagtag atgatgagtc
2101 atgggattaa agccaaaaca tccttcaagt ctgtggtttt gatgcagaga agaaaatagt
2161 tttgattttt gagtttttaa cagaagtata aaacttaaca ttctcatagc tcctgtcctt
2221 gtattctcac tcctacactt aaaaaaaaaa tccttactga ctagttatgt gagatgctaa
2281 aacttacaac attgcagtta ctgatacaaa tggtgttaac tgggaatatt aaagcattct
2341 aaatgtcaaa aaaaaaaaaa aaa
//