LOCUS BC046184 1947 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens jumonji, AT rich interactive domain 2, mRNA (cDNA
clone IMAGE:5393382), partial cds.
ACCESSION BC046184
VERSION BC046184.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1947)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1947)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: e Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1947
/db_xref="H-InvDB:HIT000098309"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5393382"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1947
/gene="JARID2"
/db_xref="GeneID:3720"
/db_xref="HGNC:HGNC:6196"
/db_xref="MIM:601594"
CDS <1..1111
/gene="JARID2"
/codon_start=2
/product="JARID2 protein"
/protein_id="AAH46184.1"
/db_xref="GeneID:3720"
/db_xref="HGNC:HGNC:6196"
/db_xref="MIM:601594"
/translation="PVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGM
VFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQML
ESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWT
SMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQ
RRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQ
ENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKNGSIENCL
SKPTPKRGPRKRATVDVPPSRLSASSSSKSASSSS"
BASE COUNT 507 a 448 c 496 g 496 t
ORIGIN
1 cccagtagga aaatcagaac ccttttcgag gcatggatgg aacctcaccg tcctccccaa
61 taacacaggg tccatcctgc gtcacctcgg tgctgtgcct ggagtgacta ttccctggct
121 aaatattggc atggtctttt ctacctcatg ctggtctcga gaccaaaatc accttccata
181 cattgactac ttacacactg gtgctgactg catttggtat tgcattcctg ctgaggagga
241 gaacaagctg gaagatgtgg tccacaccct gctgcaagcc aatggcaccc cagggctgca
301 gatgctggaa agcaacgtca tgatctcccc ggaggtgctg tgcaaagagg ggatcaaggt
361 gcacaggacc gtgcagcaga gtggccagtt tgtcgtctgc ttcccgggat cctttgtgtc
421 caaagtgtgc tgtgggtaca gcgtgtctga aaccgtgcac tttgctacca cccagtggac
481 aagtatgggc tttgagaccg ccaaggaaat gaagcgtcgc catatagcta agccattctc
541 catggagaag ttactctacc agattgcaca agcagaagca aaaaaagaaa acggtcccac
601 tctcagtacc atctcagccc tcctggatga gctcagggat acagagctac ggcagcgcag
661 gcagctgttc gaggctggcc tccactcctc cgcacgctat ggcagccacg atggcagcag
721 cacggtggcg gacgggaaga aaaagcctcg aaagtggctg cagttggaga cgtcagagag
781 gaggtgtcag atctgccagc acctgtgcta cctgtccatg gtggtacaag agaacgaaaa
841 cgtcgtgttc tgtctggagt gtgctctgcg ccacgtggag aaacagaagt cctgccgagg
901 gctgaagttg atgtaccgct acgatgagga acagattatc agtctggtca atcagatctg
961 cggcaaagtg tctggtaaaa acggcagcat tgagaactgt ctcagtaaac ccacaccaaa
1021 aagaggtccc cgcaagagag cgacagtgga cgtgcccccc tcccgtctgt cagcctccag
1081 ttcatccaaa agtgcttcga gctcatcatg aagatgccaa cgcccgtggt cgatttatat
1141 atattttttt gtaattatta tattctagtt tggagtactt gctgtaggat tcaagctgtc
1201 tttgcactag ctctaaagaa gattttcttc tggttttaga gaactaattt tgttttagca
1261 ttaaactgtt gaactttttt ttgtacttag aaaacctaga tactgcagtc agattttgga
1321 aactgccgta tagtcactgt tttaaaaacc ccggaggggc tgtattaatt tgtattgccc
1381 catggctgac aaaagccttt tttttttgtt ttgatttttt ttttttgtaa ctgttggggg
1441 gaaaaaggct ttttaaccca tttttgaaga gggtgaagtt tggagaacaa atttaaaaac
1501 catcagtcat gtgagcagat tttttagaag ggataggaga cacacgcgca cacacacaca
1561 cacacacgaa acttgaaatg gctttgcttt ggctgtcgtc ttctgccgtg tgccagatga
1621 gcttgtgatc tgggaagccg gggcaccccc gttttgtttc tctgggcggt tgtggcagct
1681 gaaggcggac gttgtttcct aaccataggt ggaacgagga gacgggagcg agtgggctct
1741 ccaccagcac atcactatgc atctgttcca ggaaagaaga aaagcgagcg aggaagacgg
1801 aaaagactgc ctgccttgga ggggtcacat gagggagacc tgtgcctgat ttcattagga
1861 aatccattct gttatttttt ggtgctgttg gctactttat caaaaaaccc ttcaatagca
1921 tccttaagat ttaaaaaaaa aaaaaaa
//