LOCUS BC045628 3529 bp mRNA linear HTC 09-SEP-2005
DEFINITION Homo sapiens nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 1, mRNA (cDNA clone IMAGE:5267481), with
apparent retained intron.
ACCESSION BC045628
VERSION BC045628.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3529)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3529)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3529
/db_xref="H-InvDB:HIT000098084"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5267481"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 793 a 1036 c 1046 g 654 t
ORIGIN
1 ggcgctcggg gcctgctgcg gtgcccgcgg gtctgtgccg ctgaagtggg cacccctcct
61 ccagcctcgt gaggacagcg gccgtccctc ggcgcggggc tggtctgcca cgggcgcctc
121 cccgtgtccc ctgggccgcc gcacggcctc tgccacggtc ggccctttca gtccctcaga
181 agcacttggg tttaaagtct ccatgtcatt aaaacaacga gcaggtagac gaggcggccg
241 gagcgtgtcc gccgcagtct gggctgtgaa cgggcccctc gcccgcccct cctgagccgg
301 agctgctccg gaggacgaga agctctcctc gtggaaagtc ttactaacct ggcccggcgc
361 ccaggtctga ggccttcccc ccggctgagg atgattgaaa gagcctgtgt gccgccatcc
421 aacgtcgtta ctgtcgcaga cggcggctac cgcgtgatgg atggagcagc ggactcagcc
481 gtgcaaatca ttcatcgggg tcagtgcctg gtgccgtggg accgcggcgt gggggtttca
541 acgcgtaaaa atcgcaccgc acgccacccg gagacggagc ctgctgtcgg cagggcgggc
601 cgggctgcgg ggccgggtgc tccggaggcc gctgaagagg cagctcccca acgccaagag
661 cccgtccagc cccaggcccg gagctgcttc ctcagggagc ccaccctgtg acgtgcccga
721 ggtgaggcgg ccaccagagg ccgcgtccaa acctgtgcgc caggcagcgt gtggctgagg
781 ctcagacgtc gactcacgcg tttcagttcc tctcgagaaa actcgctgcc acctggtctc
841 agccagcgac cgcgagggac agtgagaaag gcgagagcgg gcacacgccc cccatcaacc
901 tggtgtggcc gggggaaggc gagagcgggc acacgccccc catgaacctg gtacggccgg
961 gggaaggcga gagcgggcac acgcccccca tgaacctggt acggccgggg gaaggcgaga
1021 gcgggcacac gccccccatg aacctggtgc ggccggggga aggcgagaac gggcacacgc
1081 cccccatcaa cctggtaccg ccgggggaag gcgagaacgg gcacacgccc cccatcaacc
1141 tggtgcggcc gggggaaggc gagagcgggc acacgccccc catcaacctg gtaccgccgg
1201 gggaaggcga gagcgggcac acgcccccca tcgacctggt accgccaggg gaaggcgaga
1261 gcgggcacac gccccccatg aacctggtgc ggccggggga aggcgagagc gggcacacgc
1321 cccccatcga cctggtaccg ccgggggaag gcgagagcgg gcacacgccc cccatcgacc
1381 tggtaccgcc gggggaaggc gagagcgggc acacgccccc catcgacctg gtaccgccgg
1441 gggaaggcga gagcgggcac acgcccccca tgaacctggt accgccgggg gaaggcgaga
1501 gcgggcacac gccccccatc gacctggtac cgccggggga aggcgagagc gggcacatgc
1561 cccccatcga cctggtaccg ccgggggaag gcgagagcgg gcacacgccc cccatgaacc
1621 tggtgcggcc gggggaaggc gagagcgggc acacgccccc catgaacctg gtaccgccgg
1681 gggaaagcga gagcgggcac acgcccccca tcaacctgta aatgaaataa tacgaaatga
1741 cctctccagc acgagcaccc actcctagtt gccacattgg agcactcagt tcagcagggg
1801 tatgctgact tcagcagaca aagacttttg aataaataaa ctgaactcac acctggtacc
1861 actcagaacc tccaactgac tgaatgccag gagctgaaca ttaatatgtg caaagattgg
1921 ctctccaaca agaaggaaag cagggaggaa gggagaccac tgtgtcacct ggaggagaag
1981 tcatctcatg acaacagaag ggaggtggcc gggctgagca cgggagaccc accgtgcagg
2041 ggcctttcat gggaacggcc cacacgcagt ttgaccccac gcccagccct tctggcaccc
2101 ctggggttca atactggaag tgccttattt aaccagacca tcagggcatc atagaattga
2161 gcattgaatt tgctactgta ggagtatttt taggagcaga aactgcaaac acatttcatt
2221 gtgaggtttt accctctgta tgaatgaaga gaacgctgga aggctgcgag aggactctag
2281 tatgagtctc caacatttgg aacgtttcct gggctgtcac gtacactcct gctgccttac
2341 acagtgcatt ttagaatctt ccagtctgtc atctcagctc ttttgtaaca tgcttccctt
2401 gtctgcgcgg ttgaaaccgt aggcttgttc atagtcgcat gctcgcatct ttgtttttaa
2461 tctggcttcg aacatagcac aagtaacttg aatagcacat caataggtta ctggacaaaa
2521 gcagaaaaac ctgttacagg atagcctgca tttgcatgtg tgtacatatc taggcatcta
2581 tttatgtata aataataaca gagccgacgt gtcctcgccc aggagggctt ccctgtcagc
2641 aataaccggc atccgttttg gaacctgcgt ctggggctcc agtcgctgct cttgctggcg
2701 tccatcgccg cctcggacgg ccgtgcattt tctcgtctca cgcagttcga ggaggaccct
2761 agaaagccag gagctgtgat tgacagtagc tgtaggttac cagacggcaa cattagaaag
2821 tgattgtaaa taacatgcaa cctaagtgta atatatttgt tcagttataa gatgattgtt
2881 tcacagaagc cttaccactc tctgcttcat ctaagaaaac caataccaaa aacgccactt
2941 taatgctcag ccctgcgttg tgtgttttca gatgagttac tgttaacagg taggtttgtg
3001 taggccttgc tgggcactct gtacaattag ttgcttatta cgtatgatta ctcgcagcga
3061 tctattgttc catataacca aaaagcatgg tttattcatt gaaacacggt tgacctgaac
3121 tcgtgcctta ggaattaatg cccccttatg gaacctgcct gaattgcacc tgcgggtgga
3181 ggctccggct gtgaagtcac tgaacagaac gtcgctgatg gagaaagggc tcccgcagaa
3241 ggaacggcct gtaccgtgcg ctccggcaca atcgcgtctc ttgtgtctca ctcacggaaa
3301 gaaacaacct gaaggccatc ccgtcggtct gcacgtaacc gtgaagacgt gtggccgcgt
3361 cccacctgcg gctgggtacc ctgcacccgg cactgtagga gtcacgtgca gcctttctca
3421 ggggactgtc attgaaaagg aaacgtttga tgtctgtgtc agctgtcttt gtagttagga
3481 aatagatcca ataaagccgt atttttttgc tggaaaaaaa aaaaaaaaa
//