LOCUS BC045625 3340 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens lin-9 homolog (C. elegans), mRNA (cDNA clone MGC:39574
IMAGE:4837217), complete cds.
ACCESSION BC045625
VERSION BC045625.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3340)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3340)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: b Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32996736.
FEATURES Location/Qualifiers
source 1..3340
/db_xref="H-InvDB:HIT000098082"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39574 IMAGE:4837217"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3340
/gene="LIN9"
/gene_synonym="BARA"
/gene_synonym="BARPsv"
/gene_synonym="Lin-9"
/gene_synonym="TGS"
/gene_synonym="TGS1"
/db_xref="GeneID:286826"
/db_xref="HGNC:HGNC:30830"
/db_xref="MIM:609375"
CDS 311..1987
/gene="LIN9"
/gene_synonym="BARA"
/gene_synonym="BARPsv"
/gene_synonym="Lin-9"
/gene_synonym="TGS"
/gene_synonym="TGS1"
/codon_start=1
/product="lin-9 homolog (C. elegans)"
/protein_id="AAH45625.1"
/db_xref="GeneID:286826"
/db_xref="HGNC:HGNC:30830"
/db_xref="MIM:609375"
/translation="MHRGGQPLKKRRGSFKMAELDQLPDESSSAKALVSLKEGSLSNT
WNEKYSSLQKTPVWKGRNTSSAVEMPFRNSKRSRLFSDEDDRQINTRSPKRNQRVAMV
PQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCV
CLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK
VADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTG
LGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLL
GQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSY
SMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRR
CEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLT
DSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD"
BASE COUNT 1078 a 633 c 679 g 950 t
ORIGIN
1 agcgcgggcc gcggaacatg cgccgggagc ggggcccggg cgggactccg gagctggtac
61 tgctcccccc gcgctccggc gccgggcctc gccgtgcggc ctccttcctc ccttcctccc
121 gcccggctcg gccggaggcg gcggcggagg ggcgaggcgc ggcccccctt cggcggcacc
181 tcctccccgg gcaggcgcgg gcggagccgg gcccgcctca gccagccgcg gcgggagcag
241 cgcagcgcgg cgccgcgggc agcgagctcc gcattcgaac ctccctcgca aagacagtct
301 ccgccccaca atgcaccgcg gcgggcagcc tttgaaaaag cggcgcggct cgttcaagat
361 ggcggagctc gaccagttgc ctgacgagag ctcttcagca aaagcccttg tcagtttaaa
421 agaaggaagc ttatctaaca cgtggaatga aaagtacagt tctttacaga aaacacctgt
481 ttggaaaggc aggaatacaa gctctgctgt ggaaatgcct ttcagaaatt caaaacgaag
541 tcgacttttt tctgatgaag atgataggca aataaataca aggtcaccta aaagaaacca
601 gagggttgca atggttccac agaaatttac agcaacaatg tcaacaccag ataagaaagc
661 ttcacagaag attggttttc gattacgtaa tctgctcaag cttcctaaag cacataaatg
721 gtgtatatac gagtggttct attcaaatat agataaacca ctttttgaag gtgataatga
781 cttctgtgta tgtctaaagg aatcttttcc taatttgaaa acaagaaagt taacaagagt
841 agaatgggga aaaattcggc ggcttatggg aaaaccacgg agatgttctt ctgcattttt
901 tgaggaagag agatcagcat taaaacagaa acggcagaaa ataaggctct tacaacaaag
961 gaaagttgca gatgtttcac aattcaaaga tctcccagat gaaattcctt tgcctctggt
1021 tattggaacg aaagttacag cacgattacg tggtgttcat gatggtttgt tcactggaca
1081 aatagatgct gtggatactc ttaatgctac ttatagagta acttttgata ggacagggct
1141 tggaacccat accatccctg actatgaagt tctcagtaat gaacctcatg agacaatgcc
1201 aattgctgcc tttggacaaa aacagcggcc ttctcgattt tttatgaccc caccacggtt
1261 acattatact cctcctctcc agtcaccaat tatagataat gatcctttat taggacagtc
1321 gccgtggaga agtaaaattt ctggctctga cactgaaaca ttaggtggtt ttccagtaga
1381 atttcttatc caagtgacca gattatcaaa aattctcatg attaaaaagg aacatatcaa
1441 gaaattaagg gaaatgaaca cagaagcaga aaaattgaaa tcatattcca tgcccatcag
1501 cattgaattt cagcggagat atgcaacaat tgttctggag cttgaacagc tgaacaagga
1561 cctaaacaaa gttttgcata aagttcaaca gtattgctat gagcttgctc cagaccaggg
1621 gctccagcct gcagatcagc caacagatat gagacgcagg tgtgaggaag aagcacagga
1681 aattgttcgg catgcaaatt cctcaacagg acagccctgc gttgaaaatg aaaatctgac
1741 agacttaatt tccaggctta cagctatttt gttacaaatt aagtgtctag cagaaggagg
1801 agacctgaat tcctttgaat tcaaatcact tacagactca ttaaatgata tcaagagtac
1861 aatagacgct tctaatatca gttgctttca gaataatgta gaaatccatg ttgcacatat
1921 tcagagtggc ctgagccaga tgggaaactt acatgccttt gcagcaaata acaccaacag
1981 agactgagta aagatttcat tattccaact gcacgggaca ttgtttttga gaagttcttt
2041 tcctttatat aggcttccaa caccaaataa cctaactgct ggaaaacaag ggaaatttaa
2101 atctccaaat aaggcatttt aatagactgt actgcttctt aaaccagcat tgctgaccag
2161 cattatattt atttttcttt tattattcag atgcagtagc attgcttatg ttacatatgt
2221 ttatattcac aaatattttt aaactgaaat atctgaacat aatataattt cgtggaagaa
2281 tacattgacc atttttttta atgtgcatga attcaccgca acacatgcag acaactgctg
2341 caatggagag tatgaagaaa cctggtcttt ttattcatgt cggtggcagt gtggaaattc
2401 catccagaaa attacaactc cacttgattt agttgatcac catctcagtc ttcaaaagat
2461 aacatcatga ggtgtgggaa gtcctagttt taaggaaacc actgaaatat agatgggaaa
2521 tgtggacttt acaagtatat gttatatata cttgcaatgt gacatggttc tgtagatcat
2581 tttataataa taaatatttt aatttatcat aacatataaa agaaaccttt gttgtttgtt
2641 gaaagaaaat gaaggaacag ggggaaaaaa ggtgcaaaat gctaaatttc taaaaatgga
2701 tttggcatgt cttcccatca gttcaggtca aaagtgcatt gttgtgagat ttattaaaaa
2761 aaaaatgata acacactatt ttcatatttt tttgtttatt tgcacaactt ttaaaccaga
2821 ttactggtta aaatccaaca gtacacaatt tataaagtaa aaagatttta taaggaaaac
2881 aaatataata accagtgctg tgaaatgcag aagaaaggct tgttttggtt gtttttcttt
2941 tttaggaaaa cgctgcctaa aatgttaatc ttgtaaaaag tatgtatttg gaattttctt
3001 cgttttaata gaatattata aactcaaaat ataaattttt ttcaaatttg gagtttaaga
3061 tatagctgta gaggtggttt taattccttt agatgtctca taaaatgaga ctttttatat
3121 gttaatgtat aataaaactg aaacaagatt attttccatt tgaaattttt gtatagttta
3181 aaaaggcttc cgtattcttt gttggtattg tgccactgca gaactttagt gcagagttta
3241 tatttagcta aactgttatg ttaattaaga aatgcataaa tcttctattc ttaatatttg
3301 taattctaaa taaattgatc tatgaaaaaa aaaaaaaaaa
//