LOCUS BC045532 4094 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens LSM8 homolog, U6 small nuclear RNA associated (S.
cerevisiae), mRNA (cDNA clone IMAGE:5268365), with apparent
retained intron.
ACCESSION BC045532
VERSION BC045532.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4094)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4094)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: k Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21314665
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4094
/db_xref="H-InvDB:HIT000052925"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5268365"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 1256 a 693 c 858 g 1287 t
ORIGIN
1 ctggcgggtt ctggcgcgcc ctttcagttc tgcttgctgt ccgcaccgct gcgttacccg
61 gaaccgccgg gccgaacagc atgacgtccg ctttggagaa ctacatcaac cgaactgttg
121 ccgttattac atcagatggg agaatgattg tgggaacact gaaaggtttt gaccagacca
181 ttaatttgat tttggatgaa agccatgaac gagtattcag ctcttcacag ggggtagaac
241 aagtggtact aggattatac attgtaagag gtgacaacgt gtaagtaaaa tatatctgtt
301 aaaattataa atgatactgc cttactttat ggagaagagg ctttccccaa aataccctac
361 tgtattgtcc atacatagtt aatagaatct tgcattcatt tctttcgtaa atataccttt
421 tcttatgttt gtgtaaaata aggcatatgt atacatttta tgtcagcact tctttaggtt
481 tcaaccaaag ctgtctctct acaaattaaa cttttacctg agatttgccc atttttctac
541 tagttaagta gcctgggtag agtccagaaa gggctctgcc ttatattaaa tacttcatta
601 gagagacttc ttaaaacgtt ctttcaaata cccagaattt tagaggaaca tatttctaga
661 gtccaaggcc aaagtttgaa aaatgttttg aaatctctga tttgaacaat attaattcat
721 gctcaataac ataggtgtat ttataaataa gtacttactc gttattcatt ttcttttaat
781 tttttagtat cattgacaca cttaagatgt ccctgtggcc tcagtttact tgggacagac
841 agatataaaa gttcaagagt aattggccag gcatggtgcc tgtaatccca gcactttggg
901 agtctgaggc aagtggatca ggtcaggagt tcaagaccgg cctcgccaac atggcaaaac
961 actgtctcta ctaaaaatac aaaaattagc caggcttggt ggcgtgcgcc tgtagttcca
1021 gctacttggg aggctgaggt gggagaatca cttgaaccca ggaggtagag gttgcagtga
1081 gccgagatca ccctactgca ctccagcctg ggtgacagat tgagacacca attcaaaaaa
1141 aaaaaggccg ggcacagtgg ttcaagcatg taatcccagc actttgggag gtggaggcgg
1201 gtggatcact tgaggtcagg agttcgagac caacttggcc aatgtggtga aaccgcgtct
1261 ttactaaaaa tataaaaatt agccaggcgt ggtggcgcaa gcctgtaatc ccagctactc
1321 gggaggctga gtcaggagaa ttcgcctggg aggtggaagt tgcagtgagc cgagatcgca
1381 gcactgcatt ccagcctggg caacaagagc aaaactccgt gtcaaaaaat aaaaaagaaa
1441 agtggctaat gtggttcacg tgccgtggct catgcctata atctcagcac tttgagaggc
1501 caaggtgggt ggatcacctg agcccaggag ttcaagacca gcctggccag catagtgaaa
1561 ccccgtctct ccttaaaata gaaaaattag cctggtgtgg tggtgcatgc ctgtaatccc
1621 agctacttgg gaggctgagg cagaagaatt tcttgaacct ggtagatgga ggttgcagtg
1681 agccaaggtt gcgcctttgc actccagcct gggcaaaaag agtgaaaccc catcttgaaa
1741 aaaaaaagaa aagtggctga tgtgacagag gaactgaatt ttaaatttta tttaattgta
1801 attaatttta atagttacat gtggccagta ttagtatagt tatagaggct agaagaatgc
1861 caaatcagtt ttctagtgag tactacactg aatcaaaata tagttggaaa gaagcaaaag
1921 atacattagc aattttaagc tagaacattt aacaaattct aggggactaa ctgtcccctg
1981 gaataactta aaaagtgcag gaataattta ctcatttaag ttgtttatgt tagcatcacc
2041 tttagatgaa taaataattt gatctgtaat caaaaatcaa gagtttataa aatattttag
2101 agatgacttt taggtggagt tacaaggtga gctgtaagta atgagagaga gacagagcag
2161 atagggccca ggtctctgga tcagaacaac actgtttata ttggagctgt gcatagtaat
2221 tgattttaag gtttctccta cttaaaacaa tttttttttc ttgaacttca gtgaaaaaag
2281 tcttgtgcta gagccagctt ctactggccc atgaaagcat attgttatat tttaaggaat
2341 tttacaagct ggttaattga tgtcttgtta gtagcttgaa attggctgtg gtgggagtgt
2401 ttgcacaatg gatattagta aatgcagcaa atcagtctcc cgcttttttt ccagagagct
2461 ggtttttaaa aatgtatcag catttccctg cttaccatag ggattttaaa tgatactgaa
2521 tattatcatt taaaatttaa gaatatttaa gagtggaatt gaggccttta gtttgagaaa
2581 acttaattca ttctgccaga gtttcatatt tttcatttat tagatgattt aagactttat
2641 atactttaaa gcaaaatttg gcaaatccct tattactagt attcgtcttt agaatttggc
2701 cgggcacagt ggctcacacc tgtagtccca gcactttggg aggctgaggc tggcgaatta
2761 ccagaggtca gaggttcgag acctgcctag ccaacgtggt gaaaccctgt ctctactaaa
2821 aatacaaaaa ttagccgggt gtggtggcat gcgcctgtaa tcccagctac tcgggaggct
2881 gaagcatgag aatcgcttga acctggtaag tagaggttgg agtgagtcaa gatcgtgcca
2941 ctgcactcca gcctgtgcaa caagagcgaa actctatctc aaaaaaaaaa aaaaaagaat
3001 ttactctcat taaaaccaaa caaatgtaaa cccaaccaat actttttaaa aataatattt
3061 catagacatc ttgtggtctg agtgataaca ttgaatattt ccagttagag ggctatgggt
3121 tggttatcta gcgtggtatt aatgaattta aagttataga tactatgtta gtgttgaaca
3181 agaaaaaatt ttctagcttt taacctgagc caatcacgtc aaaaatgatt tgttagatac
3241 caaagtactt gttcctacta ttatttttgt atatgaagaa ctggctttgg atttaactga
3301 aaacttagga aaacaatcta atcgctgttg tctatatcat tgatttaatt catcaaagtt
3361 actcaaatga ttgatatttt tacttgctaa ttattttagg agtgattttg tgaaatttat
3421 ttttaataca gtcctagaat tgaattgaaa tatggtttgg aagtttgagg gttttttact
3481 gtgtctatcc ttgtgtgtct gtttccttta aagattcatg atacaatcac tgtgtacaat
3541 gtgtccttta atattggttc ctgtaataat gtgccttcaa attatttctt gagttttgtg
3601 acttaaatat gcagttcact gactcacgcc aatgttgttt gctttttacc ttaattcttt
3661 ttactgtgct ctctcagttt tattttttgg aagaatggta ctcagtgctt tgatttgatt
3721 agtaagattt ttgaaacaca tgtaatttat ttcagaaatg tgattgtttt aactctgact
3781 tttttagtgc agtcattgga gaaatcgatg aagaaacaga ttctgcgctt gatttgggga
3841 atattcgagc agaaccttta aattctgtag cacactgagg aaaaactaca tacttggaca
3901 tctgtaaatc tttgtacaga aactgattat tctgaggatg atatatggag tttttatgaa
3961 tgtgtcactg gattttgact ccttattgat tcattgtaat atgtaaatta aaatatttct
4021 acattttatt gaaaaaaaaa cctttttttt tgcctaaata taagtttggt agcttggaaa
4081 aaaaaaaaaa aaaa
//