LOCUS BC044952 2967 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens virus-induced signaling adapter, mRNA (cDNA clone
MGC:50830 IMAGE:5751684), complete cds.
ACCESSION BC044952
VERSION BC044952.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2967)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2967)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42734342.
FEATURES Location/Qualifiers
source 1..2967
/db_xref="H-InvDB:HIT000052914"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50830 IMAGE:5751684"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2967
/gene="VISA"
/gene_synonym="Ips-1"
/gene_synonym="KIAA1271"
/gene_synonym="MAVS"
/db_xref="GeneID:57506"
/db_xref="MIM:609676"
CDS 107..1729
/gene="VISA"
/gene_synonym="Ips-1"
/gene_synonym="KIAA1271"
/gene_synonym="MAVS"
/codon_start=1
/product="virus-induced signaling adapter"
/protein_id="AAH44952.1"
/db_xref="GeneID:57506"
/db_xref="MIM:609676"
/translation="MPFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRA
TCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCELVDLADEVASVYESYQPRTSDR
PPDPLEPPSLPAERPGPPTPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQA
LQTLSPRAIPRNPDGGPLESSSDLAALSPLTSSGHQEKDTELGSTHTAGATSSLTPSR
GPVSPSVSFQPLARSTPRASRLPGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESD
QAEPIICSSGAEAPANSLPSKVPTTLMPVNTVALKVPANPASVSTVPSKLPTSSKPPG
AVPSNALTNPAPSKLPINSTRAGMVPSKVPTSMVLTKVSASTVPTDGSSRNEETPAAP
TPAGATGGSSAWLDSSFENRGLGSELSKPGVLASQVDSPFSGCFEDLAISASTSLGMG
PCHGPEENEYKSEGTFGIHVAENPSIQLLEGNPGPPADPDGGPRPQADRKFQEREVPC
HRPSPGALWLQVAVTGVLVVTLLVVLYRRRLH"
BASE COUNT 607 a 940 c 815 g 605 t
ORIGIN
1 ggcggcggtc gccaggtctc agggccgggg gtacccgagt ctcgtttcct ctcagtccat
61 ccacccttca tggggccaga gccctctctc cagaatctga gcagcaatgc cgtttgctga
121 agacaagacc tataagtata tctgccgcaa tttcagcaat ttttgcaatg tggatgttgt
181 agagattctg ccttacctgc cctgcctcac agcaagagac caggatcgac tgcgggccac
241 ctgcacactc tcagggaacc gggacaccct ctggcatctc ttcaataccc ttcagcggcg
301 gcccggctgg gtggagtact tcattgcggc actgaggggc tgtgagctag ttgatctcgc
361 ggacgaagtg gcctctgtct acgagagcta ccagcctcgg acctcggacc gtcccccaga
421 cccactggag ccaccgtcac ttcctgctga gaggccaggg ccccccacac ctgctgcggc
481 ccacagcatc ccctacaaca gctgcagaga gaaggagcca agttacccca tgcctgtcca
541 ggagacccag gcgccagagt ccccaggaga gaattcagag caagccctgc agacgctcag
601 ccccagagcc atcccaagga atccagatgg tggccccctg gagtcctcct ctgacctggc
661 agccctcagc cctctgacct ccagcgggca tcaggagaag gacacagaac tgggcagtac
721 ccacacagca ggtgcgacct ccagcctcac accatcccgt gggcctgtgt ctccatctgt
781 ctccttccag cccctggccc gttccacccc cagggcaagc cgcttgcctg gacccacagg
841 gtcagttgta tctactggca cctccttctc ctcctcatcc cctggcttgg cctctgcagg
901 ggctgcagag ggtaaacagg gtgcagagag tgaccaggcc gagcctatca tctgctccag
961 tggggcagag gcacctgcca actctctgcc ctccaaagtg cctaccacct tgatgcctgt
1021 gaacacagtg gccctgaaag tgcctgccaa cccagcatct gtcagcacag tgccctccaa
1081 gttgccaact agctcaaagc cccctggtgc agtgccttct aatgcgctca ccaatccagc
1141 accatccaaa ttgcccatca actcaacccg tgctggcatg gtgccatcca aagtgcctac
1201 tagcatggtg ctcaccaagg tgtctgccag cacagtcccc actgacggga gcagcagaaa
1261 tgaggagacc ccagcagctc caacacccgc cggcgccact ggaggcagct cagcctggct
1321 agacagcagc tttgagaata ggggccttgg gtcggagctg agtaagcctg gcgtgctggc
1381 atcccaggta gacagcccgt tctcgggctg cttcgaggat cttgccatca gtgccagcac
1441 ctccttgggc atggggccct gccatggccc agaggagaat gagtataagt ccgagggcac
1501 ctttgggatc cacgtggctg agaaccccag catccagctc ctggagggca accctgggcc
1561 acctgcggac ccggatggcg gccccaggcc acaagccgac cggaagttcc aggagaggga
1621 ggtgccatgc cacaggccct cacctggggc tctgtggctc caggtggctg tgacaggggt
1681 gctggtagtc acactcctgg tggtgctgta ccggcggcgt ctgcactagt gaagccctgg
1741 gctcttccca ccacccatct gttccgttcc tgcagtacac ctggcccctc tccgaagccc
1801 cttgtccctt tcttggggat tgtggaggct gggtcagagg ggagttaagg gactgcaggc
1861 ctggcagcag gacatgcctt ggctgaacca agtcctgaga gcagcatctc tgtccccacg
1921 gtgccttgtg tgggtccccg tccttggctt tctgggtcct gggctgcccc cagtgctcca
1981 gaccttcccc actggcaatc caggttatca tccatgtcct ccagaggagc ttcctcctcc
2041 aggcctcagc cctgttggcc caggtggagc aggagggacc actggaacat gtggtgcttg
2101 ggaatgcctc tcctgttgca ttggtccctg aaggcctcag ggcaggtatg tggtgtgtgg
2161 gcgactccac aagacctgcc tcccatcctg gcagcccagc ctgagaccgt tgcattgagg
2221 caggcaggag cggcagggtg gctgctctcc aggagcccac ctgccttgag ttcctgcccc
2281 actgggcccc ctcccctgct gggcaatcct gggaaggtct ggaggttcct gtggacctca
2341 gggaagccag gggcagctgt caggcctgag gaagacctgt ggagctcctc tccagcctcc
2401 tctttccctc ccctctggtc tccattctct tcagctccct acatgggctg gggaggagac
2461 acctggtggg cagagctcag gcagaggttt ggatttcagc tccctcactt ccggggctgt
2521 gtggctttgg cagatgtcag acttctggtc ttgcttctcc acgtggacag tgagtatctg
2581 gctcattctt cactgggttc ttctgagatt gaacctacag gtgtttgcca agtgcctggc
2641 ccagagcaag tggccactgc ttctcccatc tctctcctgc ccaacctggt agagctgagg
2701 gcatgagagg cagagtgcac agtggtcaag ggtgcagctc tgcagcacag gcagcctagg
2761 cctgcgtccc aacctgcctc tcaccagctc tgtgaccttg ggcaagggat ttatctgtct
2821 gtcccttagt tttctcacct gtaaaaggag gataagtata tatatatatt tccccagtgt
2881 tgtgaagatt aaagttgttt atcgatgtaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2941 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//