LOCUS BC044851 3556 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 41 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:42423 IMAGE:4822048), complete cds.
ACCESSION BC044851
VERSION BC044851.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3556)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3556)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: e Column: 11.
FEATURES Location/Qualifiers
source 1..3556
/db_xref="H-InvDB:HIT000052899"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42423 IMAGE:4822048"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3556
/gene="VPS41"
/gene_synonym="HVPS41"
/gene_synonym="hVps41p"
/gene_synonym="HVSP41"
/db_xref="GeneID:27072"
/db_xref="HGNC:HGNC:12713"
/db_xref="MIM:605485"
CDS 22..2586
/gene="VPS41"
/gene_synonym="HVPS41"
/gene_synonym="hVps41p"
/gene_synonym="HVSP41"
/codon_start=1
/product="vacuolar protein sorting 41 homolog (S.
cerevisiae)"
/protein_id="AAH44851.1"
/db_xref="GeneID:27072"
/db_xref="HGNC:HGNC:12713"
/db_xref="MIM:605485"
/translation="MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQ
KDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVC
SEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMN
RWKSAVLHEGEGNIRSVKWRGHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMY
PCSLCWKDNVTLIIGWGTSVKVCSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAP
LCDQLVVLSYVKEISEKTEREYCARPRLDIIQPLSETCEEISSDALTVRGFQENECRD
YHLEYSEGESLFYIVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQKNIKRH
KILDIGLAYINHLVERGDYDIAARKCQKILGKNAALWEYEVYKFKEIGQLKAISPYLP
RGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKKDSQNK
TLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFDSEK
AVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYD
RPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDK
AIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLR
DSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPI
LPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSAKNRGPGSAILEMKK"
BASE COUNT 1062 a 655 c 829 g 1010 t
ORIGIN
1 aggcgactct cccgtggcgc catggcggaa gcagaggagc aggaaactgg gtcccttgaa
61 gaatctacag atgagtctga ggaagaagag agcgaagagg aacccaagct gaagtatgaa
121 aggctttcca atggggtaac tgaaatactt cagaaggatg cagctagctg catgacagtc
181 catgacaagt ttttggcatt gggcacacat tatggcaagg tttatttact tgatgtccag
241 gggaacatca ctcagaagtt tgatgtaagt cctgtgaaga taaatcagat tagcttggat
301 gaaagtggag agcacatggg tgtgtgttca gaggatggca aggtgcaggt atttggactg
361 tattctggag aagaatttca cgagactttt gactgtccca ttaaaattat tgctgtgcac
421 ccacatttcg tgagatccag ttgcaagcag tttgtgaccg gagggaagaa gctgctactg
481 tttgaacggt cttggatgaa cagatggaag tctgctgttc tgcatgaagg ggaagggaac
541 ataaggagtg tgaagtggag aggccatctg attgcttggg ccaataatat gggtgtgaag
601 atttttgaca tcatctcaaa gcaaagaatc accaatgtgc cccgggatga tataagtctt
661 cgcccagaca tgtatccctg cagcctctgc tggaaggaca atgtgacact gattattggc
721 tgggggactt ctgtcaaggt gtgctcagtg aaggaacggc atgccagtga aatgagggat
781 ttgccaagtc gatatgttga aatagtgtct cagtttgaaa ctgaattcta catcagtgga
841 cttgcacctc tctgtgatca gcttgttgta ctttcgtatg taaaggagat ttcagaaaaa
901 acggaaagag aatactgtgc caggcctaga ctggacatca tccagccact ttctgagact
961 tgtgaagaga tctcttctga tgctttgaca gtcagaggct ttcaggagaa tgaatgtaga
1021 gattatcatt tagaatactc tgaaggggaa tcactttttt acatcgtgag tccgagagat
1081 gttgtagtgg ccaaggaacg agaccaagat gatcacattg actggctcct tgaaaagaag
1141 aaatatgaag aagcattgat ggcagctgaa attagccaaa aaaatattaa aagacataag
1201 attctggata ttggcttggc atatataaat cacctggtgg agagaggaga ctatgacata
1261 gcagcacgca aatgccagaa aattcttggg aaaaatgcag cactctggga atatgaagtt
1321 tataaattta aagaaattgg acagcttaag gctattagtc cttatttgcc aagaggtgat
1381 ccagttctga aaccactcat ctatgaaatg atcttacatg aatttttgga gagtgattat
1441 gagggttttg ccacattgat ccgagaatgg cctggagatc tgtataataa ttcagtcata
1501 gttcaagcag ttcgggatca tttgaagaaa gatagtcaga acaagacttt acttaaaacc
1561 ctggcagaat tgtacaccta tgacaagaac tatggcaatg ctctggaaat atacttaaca
1621 ttaagacata aagacgtttt tcagttgatc cacaagcata atcttttcag ttctatcaag
1681 gataaaattg ttttattaat ggattttgat tcagagaaag ctgttgacat gcttttggac
1741 aatgaagata aaatttcaat taaaaaggta gtggaagaat tggaagacag accagagcta
1801 cagcatgtgt atttgcataa gcttttcaag agagaccacc ataaggggca gcgttaccat
1861 gaaaaacaga tcagtcttta tgctgaatat gatcgaccaa acttacttcc ctttctccga
1921 gacagtaccc attgcccact tgaaaaggct cttgagatct gtcaacagag aaactttgta
1981 gaagagacag tttatcttct gagccgaatg ggtaatagcc gaagtgccct gaagatgatt
2041 atggaggaat tacatgatgt tgataaagca atcgaatttg ccaaggagca agatgatgga
2101 gagctgtggg aagatttgat tttatattcc attgacaaac caccatttat tactggcttg
2161 ttaaacaaca ttggcacaca tgttgaccca attctactga ttcaccgtat taaggaagga
2221 atggagatcc ccaatttgag agattccttg gttaaaattc tgcaagacta caatttgcaa
2281 attctgcttc gtgaaggctg caagaagatt ctcgtagctg actctttgtc cttactgaag
2341 aaaatgcacc gaactcaaat gaaaggtgtt cttgttgatg aggagaacat ctgtgagtcg
2401 tgcctttccc ctattcttcc atcagatgca gctaagccct tcagcgtggt ggtcttccat
2461 tgccggcaca tgttccacaa ggagtgcctg cccatgccca gcatgaactc tgctgcacag
2521 ttctgcaaca tctgcagtgc taagaaccgt ggaccaggaa gtgcaatttt ggagatgaaa
2581 aaatagctca tttctccttg tcagtctcct tgtcaccact ctttttgaga ctgtttttgc
2641 aacaacaaaa gcatttgttg acactcgtgc tgttaagaga tttgtttatg tttatattat
2701 actcaaaaac aatttcttca tctattcctg tactaatggt ttctctttgc agttcacaga
2761 gaatttgggg ctctcttcat gccttgaaat tttggggtcc atagtgaata ttttgttatt
2821 tatttgtttg gctcattctt tatatagtaa tggaaacata agtctaggag ttagaaatga
2881 attttttaga ccttagtaaa accatttaac cataaaatgg acaactgaga attctcccag
2941 ctgcctgaaa gcgtcgccaa ctgtggttat cctgcaagct gctacctgca acttggacgt
3001 tgtttccacg tgctctgctg gctacgattc ttgcattctg ggtttggctt ttttctgtgt
3061 catcaactat ggttatcctc taaataggca tttaatgaaa cattgtacaa attgtcactc
3121 atttgatgac acctgggaat aacattagca ggctgatgtc ctgcaccatt atgtttacta
3181 atcacatgtt ctgtgtgctg tgacgactgt caaagagtat ctggccatgg cggacactca
3241 gcatttgttg attgaataaa tgttagctct tctcattgtg aaggactcac ttttactggg
3301 ataaacaaat gcagttaaga attctggcac ccttgtaagg aagaaaagag agttcaacac
3361 cttcgagtct gagcgcttgt ggctagagtt tgccaggagg gaggaaacca gtgaccctga
3421 aaactgaggg tgcctcagga gcagtgggac cacctgatgc tgaaggacgg actaatgatg
3481 tttcctcttg ccttctctgg tgcctccatt gccctcatgg aacagagcat atcatagagg
3541 gaaaaaaaaa aaaaaa
//