LOCUS BC044642 3092 bp mRNA linear HUM 16-AUG-2008
DEFINITION Homo sapiens ring finger and CCCH-type zinc finger domains 2, mRNA
(cDNA clone IMAGE:5455191), complete cds.
ACCESSION BC044642
VERSION BC044642.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3092)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3092)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: j Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9256536
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3092
/db_xref="H-InvDB:HIT000052883"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5455191"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..3092
/gene="RC3H2"
/gene_synonym="RNF164"
/db_xref="GeneID:54542"
/db_xref="HGNC:HGNC:21461"
CDS 174..1694
/gene="RC3H2"
/gene_synonym="RNF164"
/codon_start=1
/product="RC3H2 protein"
/protein_id="AAH44642.1"
/db_xref="GeneID:54542"
/db_xref="HGNC:HGNC:21461"
/translation="MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNK
LHRKACPFDQTAINTDIDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCV
EDLALYLKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGE
RTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKV
LVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEAL
RREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQEL
TIVLQRTGDPANLNRLRPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFI
QNYSRKGHETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYL
HCCLLSSVASLGTVHNELYKQQHCDREKISVCAVKRAETCFSSQFFSPLEEPREED"
BASE COUNT 914 a 660 c 647 g 871 t
ORIGIN
1 ctccgccgag ctctgccccg gcgagacgag gcgcctccgt cgccaagccg cgccgtcgcg
61 gggctcccgg gagcggccct tagcgacccc gcccgggccc cctcagctta caaaacacta
121 cacagcaaaa taatgatctg ctagactgct aacccgagca tccagcttcc acaatgcctg
181 tgcaggcagc tcaatggaca gaatttctgt cctgtccaat ctgctataat gaatttgatg
241 agaatgtgca caaacccatc agtttaggtt gttcacacac tgtttgcaag acctgcttga
301 ataaacttca tcgaaaagct tgtccttttg accagactgc catcaacaca gatattgatg
361 tacttcctgt caacttcgca cttctccagt tagttggagc ccaggtacca gatcatcagt
421 caattaagtt aagtaatcta ggtgagaata aacactatga ggttgcaaag aaatgcgttg
481 aggatttggc actctactta aaaccactaa gtggaggtaa aggtgtagct agcttgaacc
541 agagtgcact gagccgtcca atgcaaagga aactggtgac acttgtaaat tgtcaactgg
601 tggaggaaga aggtcgtgta agagccatgc gagcagctcg ttcccttgga gaaagaactg
661 taacagaact gatattacag caccagaacc ctcagcagtt gtctgccaat ctatgggccg
721 ctgtcagggc tcgaggatgc cagtttttag ggccagctat gcaagaagag gccttgaagc
781 tggtgttact ggcattagaa gatggttctg ccctctcaag gaaagttctg gtactttttg
841 ttgtgcagag actagaacca agatttcctc aggcatcaaa aacaagtatt ggtcatgttg
901 tgcaactact gtatcgagct tcttgtttta aggttaccaa aagagatgaa gactcttccc
961 taatgcagct gaaggaggaa tttcggagtt atgaagcatt acgcagagaa catgatgccc
1021 aaattgttca tattgccatg gaagcaggac tccgtatttc acctgaacag tggtcctctc
1081 ttttgtatgg tgatttggct cataaatcac acatgcagtc tatcattgat aagctacagt
1141 ctccagagtc atttgcaaag agtgtccagg aattgacaat tgttttgcaa cgaacaggtg
1201 acccagctaa cttaaataga ctgaggcctc atttagagct tcttgcaaac atagacccta
1261 atccagacgc tgtttcacca acttgggagc agctggaaaa tgcaatggta gctgttaaaa
1321 cagtagttca tggccttgtg gacttcatac aaaattatag tagaaaaggc catgagaccc
1381 ctcagcctca gccaaacagc aaatacaaga ctagcatgtg ccgagatttg cgacagcaag
1441 ggggttgtcc acgaggaaca aattgtacat ttgcccattc tcaggaagag cttgaaaagt
1501 gtaacccccg tggactatat cttcattgtt gtctcctttc ctcagtggct agcttgggca
1561 ctgtacataa tgagctctac aagcagcagc attgtgatag agagaagata agtgtgtgtg
1621 cagtgaaaag agcagaaaca tgcttctctt ctcagttttt ttccccactt gaagagccta
1681 gagaagagga ttaaggagtc ctaaggaaaa aagatgctgt ttgtacccaa tcgaactagt
1741 tctatataca gaatttcaca tcaagataat ttgggagact ccaggaaata cattcagctt
1801 gtccatacct gaaatagagc tttttagcta aaaggggagc ttttgagaaa gttcgactaa
1861 aaaagtcaga gaagaaactg tggtttcatt gccattccac cctcaattag tgcccaggct
1921 gaaaatccat tttcttcttt ctcatacctt caaacagact tcacattctt catctgcagt
1981 acctagttca gaactttatt atattttgcc agacttgtaa tagtagcagt aaaaataata
2041 atagccaaac taggtgtagt ggctcatgcc tgtgttccca gcagtttggg aggcaaaggc
2101 aggaggatac cttgagtcca ggagtttgag accagcctgg gcaacatggt gagacctcac
2161 ctctacaaaa aaataaacaa aattggctga gcatagtggc atacgcctgt catcttagct
2221 actcaggagg ctgaggtggg aggattgctt gaactcggga ggtcaggtct gccgtgaact
2281 gagattatac cactgtattc caacccgggc agcagagcaa gactgtctca aaaatataaa
2341 taaataaaaa taataaaata ataaatatat aaaatatcac tcattcaaaa ataataataa
2401 tggcaaaatt attggtcaca tttttagtgt ttcacatggt aatccagttg gttttactgc
2461 ttcagtggct ttttatccag tatcttccta tatctcaatc tgtcttttcc atttccacta
2521 ttttcttttt aaaatatgtg tgtctccttt aaattcttaa ttagttcctc agtacatcac
2581 agaatctcat cctgatttta tcctctagct ctactctgcc atttgtatac tttgttttta
2641 aggtatattc aattaatcac tgttgattac tatataaatt tcttttactc ttcttttcac
2701 ttgtctatat tgtttattcc atattgtatt attttctctc tcctctttat ctggataact
2761 atttctaatc atactcagat attatcttcc ctccacagac ttccctaggc agtgttaatt
2821 gcatccttca ccatgctgcc atagcactcc atacatagta gtttaaaaat tatggtatag
2881 ttagctgggt gtggtggcaa gcacctgtgg tcccagctgc tcgggaggct gaggcgggag
2941 aatggcttga acttgggagg cagaggttgc agtgagccga gatggcgcca ctatactcct
3001 gtgtggacga cagagcaaga ttccgtctca aaaaataaat ataaataaat aaataaaaat
3061 tatggtatag ttataaaaaa aaaaaaaaaa aa
//