LOCUS BC043141 3595 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens low density lipoprotein receptor-related protein 11,
mRNA (cDNA clone MGC:41767 IMAGE:5286304), complete cds.
ACCESSION BC043141
VERSION BC043141.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3595)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3595)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC043141.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: a Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222347.
FEATURES Location/Qualifiers
source 1..3595
/db_xref="H-InvDB:HIT000052773"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41767 IMAGE:5286304"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3595
/gene="LRP11"
/gene_synonym="bA350J20.3"
/gene_synonym="FLJ14735"
/gene_synonym="MANSC3"
/db_xref="GeneID:84918"
/db_xref="HGNC:HGNC:16936"
CDS 326..1828
/gene="LRP11"
/gene_synonym="bA350J20.3"
/gene_synonym="FLJ14735"
/gene_synonym="MANSC3"
/codon_start=1
/product="low density lipoprotein receptor-related protein
11"
/protein_id="AAH43141.1"
/db_xref="GeneID:84918"
/db_xref="HGNC:HGNC:16936"
/translation="MASVAQESAGSQRRLPPRHGALRGLLLLCLWLPSGRAALPPAAP
LSELHAQLSGVEQLLEEFRRQLQQERPQEELELELRAGGGPQEDCPGRGSGGYSAMPD
AIIRTKDSLAAGASFLRAPAAVRGWRQCVAACCSEPRCSVAVVELPRRPAPPAAVLGC
YLFNCTARGRNVCKFALHSGYSSYSLSRAPDGAALATARASPRQEKDAPPLSKAGQDV
VLHLPTDGVVLDGRESTDDHAIVQYEWALLQGDPSVDMKVPQSGTLKLSHLQEGTYTF
QLTVTDTAGQRSSDNVSVTVLRAAYSTGGCLHTCSRYHFFCDDGCCIDITLACDGVQQ
CPDGSDEDFCQNLGLDHKMVTHTAASPALPRTTGPSEDAGGDSLVEKSQKATAPNKPP
ALSNTEKRNHSAFWGPESQIIPVMPDSSSSGKNRKEESYIFESKGDGGGGEHPAPETG
AVLPLALGLAITALLLLMVACRLRLVKQKLKKARPITSEESDYLINGMYL"
BASE COUNT 896 a 886 c 932 g 881 t
ORIGIN
1 gctggtgctg atcaacgccg aggccgactc gtcgccaccc agcgcgccgc aggccggggc
61 ggagaggcgc agggcgctgg gcagtctccg gcgagggcaa ggagcggtgc ccggctgggc
121 cggctatgtc tcccgctact gcggttcccg ccggcgcccg cgacctcggg ggagcagccg
181 ggttcggggg cgccgcgctg tgaggccggg gcctagagcc agccgcggcc gcgcaggagg
241 ggcccagggc ccgcgctcgc ccgcgtcccc gccttcctcc cgcgctcagc cacgcctcgg
301 ctcgctgccc ttggctctcg tcgccatggc ctccgtcgcc caggagagcg cgggctcgca
361 gcgccggcta ccgccgcgtc acggggcgct gcgcgggctg ctactgctct gcctgtggct
421 gccaagcggc cgtgcggcct tgccgcccgc ggcgccgctg tccgaactgc acgcgcagct
481 gtcgggcgtg gagcagctgc tggaggagtt ccgccggcaa ctgcagcagg agcggcctca
541 ggaggagctg gagctggagc tgcgcgcggg cggcggcccc caggaggact gcccaggccg
601 gggcagcggc ggctacagcg caatgcctga cgccatcatc cgcaccaagg actccctggc
661 ggcgggtgcc agcttcctgc gggcgccggc ggccgtgcgg ggctggcggc aatgcgtggc
721 ggcctgctgc tccgagccgc gctgctccgt ggccgtggtg gagctgcccc ggcgccccgc
781 gcccccggca gccgtgctcg gctgctacct cttcaactgc acggcgcgcg gccgcaacgt
841 ctgcaagttc gcgctgcaca gcggctacag cagctacagc ctcagccgcg cgccggacgg
901 cgccgccctg gccaccgcgc gcgcctcgcc ccggcaggaa aaggatgcgc ctccacttag
961 caaggctggg caggatgtgg ttctgcatct gcccacagac ggggtggttc tagacggccg
1021 cgagagcaca gatgaccacg ccatcgtcca gtatgagtgg gcactgctgc agggggaccc
1081 gtcagtggac atgaaggtgc ctcaatcagg aaccctgaag ctgtcccacc tacaggaggg
1141 aacctacacc ttccagctga ccgtgacgga cactgccggg cagagaagct ctgacaacgt
1201 gtcagtgaca gtgcttcgcg cagcctactc cacaggagga tgtttgcaca cttgctcacg
1261 ctaccacttc ttctgtgacg atggctgctg cattgacatc acgctcgcct gcgatggagt
1321 gcagcagtgt cctgatgggt ctgatgaaga cttctgccag aatctgggcc tggaccacaa
1381 gatggtaacc cacacggcag ctagtcctgc cctgccaaga accacagggc cgagtgaaga
1441 tgcagggggt gactccttgg tggaaaagtc tcagaaagcc actgccccaa acaagccacc
1501 tgcattatca aacacagaga agaggaatca ttccgccttt tggggaccag agagtcaaat
1561 cattcctgtg atgccagata gtagttcctc agggaagaac agaaaagagg aaagttatat
1621 atttgagtca aagggtgatg gaggaggagg ggaacaccca gccccagaaa caggtgcagt
1681 gctacccctg gcgctgggtt tggctatcac tgctctgctg cttctcatgg ttgcatgccg
1741 actacgactg gtgaaacaga aactgaaaaa agctcgtccc attacatctg aggaatcgga
1801 ctacctcata aatgggatgt atctatagta atgtaatttc aataccttgg ggcagggaca
1861 tgttttgttt ataatttata catctattaa gttctggata tttacagctt cttttgtttt
1921 taattgggcc agaagattct gcaaatccca aatctttctt tattatttat tgtaaaaaaa
1981 gtttccttag aagtcataaa atattttgaa atttagagag gaattcatga ttaaagattc
2041 ctaaaaatat aattctgatt tatgtaagct gtccctgaaa atagaaatgt gtacttagct
2101 gagagaaaat tcagcatctc aggaggtggt attaggatga ctgtgttaac ccattacctt
2161 ttagaagcca actgttggcc ccttaccatg ctggactgct ataggcccag cttccccttg
2221 ttctgtggcc cttttcttcc tccttgaagc tcccagtatt ctttttcttt tcccctctaa
2281 acctgtttct gagagtggat ctcaagcaag ttcatgcctt caatcagatg ttacttaggg
2341 tgggtatacc taaattataa accttatgta caagtcagta agccttaggg aaggtgagtg
2401 tgggtccttc ctaatccctc tgacgtcatg tcatataggt ggctgcctcc ttagactgac
2461 ctttgggaga aaaaaacccc agactttgaa ttagtaacag ctctaagatg gtcatgcagt
2521 gagataggaa atcaagatgg aagcagagaa tctggcatgc caaaaactaa cagaaactta
2581 gttgaaggca aagagagcta ggagaacgtt taatacttca ttacatcaaa tcaacactgc
2641 tccatggtga gagcacagca actcatttat atatatatat ataggctttg ttgatgaaaa
2701 acgacaattg aagagaggac gttgagtgga ttcctgggta cagcttttgt aaaaatgtca
2761 ccatggcttt catccaatgg aatgagtcga tgttttttaa tgctataaaa tgttagaatg
2821 tgccatcagc taatgccagg cttacgtatt tctagaccat aaagcagttt ttcacaaatt
2881 catctttaca gaaaaccagc atctagctta gcatctttcc ccttttaatt tgtaggcttt
2941 taaaggcaaa tcattcccac catcacttaa cgccgggatt atacacattc tagaaatgat
3001 tctgagagga gtgtatagta tggtgcctat ctacactcac atgatattct tattcacgtt
3061 ttttttaacc ataagtggca aatattttaa aatatttgaa aaacactcca gaatctagta
3121 cgctttattt ttagactgaa cctaaagtag gttgttcttt taacaaaggg tttaattcgg
3181 gtggggaata taacatatca aaatacatga acaaatggaa agttacttct agaaaagcaa
3241 agaaattggg tatcattttt gtttcttggg aagctaattt tgttgaatgt ttagaattga
3301 gcaaagatgt aaatttttga agggcagttt agaaaaatta actttgtgaa tgaacttaag
3361 atgtctgtac tctatatgtg atgctgtgca gtttgttttt atatggaaag atgtcaacta
3421 tagccataac caataaaata aatactgatg aggcatgcag ctttcagcac atcttttata
3481 catgaagaaa ttaattttgt gttgctatgg tgttgaaata tccaagatgt tctgtatcta
3541 tgtaaacatg attcctttaa taaattgtat tttattatta aaaaaaaaaa aaaaa
//