LOCUS BC042944 2338 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens ephrin-B3, mRNA (cDNA clone MGC:41892 IMAGE:5286243),
complete cds.
ACCESSION BC042944
VERSION BC042944.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2338)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2338)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC042944.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: a Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38201712.
FEATURES Location/Qualifiers
source 1..2338
/db_xref="H-InvDB:HIT000052763"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41892 IMAGE:5286243"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2338
/gene="EFNB3"
/gene_synonym="EFL6"
/gene_synonym="LERK8"
/db_xref="GeneID:1949"
/db_xref="HGNC:HGNC:3228"
/db_xref="MIM:602297"
CDS 398..1420
/gene="EFNB3"
/gene_synonym="EFL6"
/gene_synonym="LERK8"
/codon_start=1
/product="ephrin-B3"
/protein_id="AAH42944.1"
/db_xref="GeneID:1949"
/db_xref="HGNC:HGNC:3228"
/db_xref="MIM:602297"
/translation="MGPPHSGPGGVRVGALLLLGVLGLVSGLSLEPVYWNSANKRFQA
EGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLL
TCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRG
MKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEG
PLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLG
LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPP
NIYYKV"
BASE COUNT 373 a 760 c 711 g 494 t
ORIGIN
1 ggttttctcc cttagcccgc tgccctcaat cccagcgagg ctggggctcc ggctcggcgc
61 ccccttcctc gctccctggt ccggcgcccc atgccgcccc cgcccggtcc ccggctccac
121 cagtccccca cttaggcggg ctcacagatc ccggggtgct ggcgcgtggg ccgggggcgc
181 gtagggcgcc tgcagacggc ccctggaagg gctctggtgg ggctgagcgc tctgccgcgg
241 gggcgcgggc acagcaggaa gcaggtccgc gtgggcgctg ggggcatcag ctaccggggt
301 ggtccgggct gaagagccag gcagccaagg cagccacccc ggggggtggg cgactttggg
361 ggagttggtg ccccgccccc caggccttgg cggggtcatg gggccccccc attctgggcc
421 ggggggcgtg cgagtcgggg ccctgctgct gctgggggtt ttggggctgg tgtctgggct
481 cagcctggag cctgtctact ggaactcggc gaataagagg ttccaggcag agggtggtta
541 tgtgctgtac cctcagatcg gggaccggct agacctgctc tgccccaggg cccggcctcc
601 tggccctcac tcctctccta attatgagtt ctacaagctg tacctggtag ggggtgctca
661 gggccggcgc tgtgaggcac cccctgcccc aaacctcctt ctcacttgtg atcgcccaga
721 cctggatctc cgcttcacca tcaagttcca ggagtatagc cctaatctct ggggccacga
781 gttccgctcg caccacgatt actacatcat tgccacatcg gatgggaccc gggagggcct
841 ggagagcctg cagggaggtg tgtgcctaac cagaggcatg aaggtgcttc tccgagtggg
901 acaaagtccc cgaggagggg ctgtcccccg aaaacctgtg tctgaaatgc ccatggaaag
961 agaccgaggg gcagcccaca gcctggagcc tgggaaggag aacctgccag gtgaccccac
1021 cagcaatgca acctcccggg gtgctgaagg ccccctgccc cctcccagca tgcctgcagt
1081 ggctggggca gcaggggggc tggcgctgct cttgctgggc gtggcagggg ctgggggtgc
1141 catgtgttgg cggagacggc gggccaagcc ttcggagagt cgccaccctg gtcctggctc
1201 cttcgggagg ggagggtctc tgggcctggg gggtggaggt gggatgggac ctcgggaggc
1261 tgagcctggg gagctaggga tagctctgcg gggtggcggg gctgcagatc cccccttctg
1321 cccccactat gagaaggtga gtggtgacta tgggcatcct gtgtatatcg tgcaggatgg
1381 gcccccgcag agccctccaa acatctacta caaggtatga gggctcctct cacgtggcta
1441 tcctgaatcc agcccttctt ggggtgctcc tccagtttaa ttcctggttt gagggacacc
1501 tctaacatct cggccccctg tgccccccca gccccttcac tcctcccggc tgctgtcctc
1561 gtctccactt ttaggattcc ttaggattcc cactgcccca cttcctgccc tcccgtttgg
1621 ccatgggtgc ccccctctgt ctcagtgtcc ctggatcctt tttccttggg gaggggcaca
1681 ggctcagcct cctctctgac catgacccag gcatccttgt ccccctcacc cacccagagc
1741 taggggcggg aacagcccac cttttggttg gcaccgcctt ctttctgcct ctcactggtt
1801 ttctcttctc tatctcttat tctttccctc tcttccgtct ctaggtctgt tcttcttccc
1861 tagcatcctc ctccccacat ctcctttcac cctcttggct tcttatcctg tgcctctccc
1921 atctcctggg tgggggcatc aaagcatttc tccccttagc tttcagcccc ccttctgacc
1981 tctcatacca accactcccc tcagtctgcc aaaaatgggg gccttatggg gaaggctctg
2041 acactccacc ccagctcagg ccatgggcag cagggctcca ttctctggcc tggcccaggc
2101 ctctacatac ttactccagc catttggggt ggttgggtca tgacagctac catgagaaga
2161 agtgtcccgt tttgtccagt ggccaatagc aagatatgaa ccggtcggga catgtatgga
2221 cttggtctga tgccgaatgg gccacttggg accggaagtg actttctcca gacaagaggt
2281 gaccaggccc ggacagaaat ggcctgggaa gtagcagaag agaaaaaaaa aaaaaaaa
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