LOCUS BC042843 4159 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calnexin, mRNA (cDNA clone MGC:17014 IMAGE:4342723),
complete cds.
ACCESSION BC042843
VERSION BC042843.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4159)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4159)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: k Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 66933004.
FEATURES Location/Qualifiers
source 1..4159
/db_xref="H-InvDB:HIT000052743"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17014 IMAGE:4342723"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4159
/gene="CANX"
/gene_synonym="CNX"
/gene_synonym="IP90"
/gene_synonym="P90"
/db_xref="GeneID:821"
/db_xref="HGNC:HGNC:1473"
/db_xref="MIM:114217"
CDS 59..1837
/gene="CANX"
/gene_synonym="CNX"
/gene_synonym="IP90"
/gene_synonym="P90"
/codon_start=1
/product="calnexin"
/protein_id="AAH42843.1"
/db_xref="GeneID:821"
/db_xref="HGNC:HGNC:1473"
/db_xref="MIM:114217"
/translation="MEGKWLLCMLLVLGTAIVEAHDGHDDDVIDIEDDLDDVIEEVED
SKPDTTAPPSSPKVTYKAPVPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDG
KWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIEC
GGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKH
AKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREI
EDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDP
DAEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPS
YQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDW
ANDGWGLKKAADGAAEPGVVGQMIEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQ
TSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAEEDGGTVSQE
EEDRKPKAEEDEILNRSPRNRKPRRE"
BASE COUNT 1241 a 756 c 903 g 1259 t
ORIGIN
1 ggcacgtgac ggtcgggccg cctccgcctc tctctttact gcggcgcggg gcaagatcat
61 ggaagggaag tggttgctgt gtatgttact ggtgcttgga actgctattg ttgaggctca
121 tgatggacat gatgatgatg tgattgatat tgaggatgac cttgacgatg tcattgaaga
181 ggtagaagac tcaaaaccag ataccactgc tcctccttca tctcccaagg ttacttacaa
241 agctccagtt ccaacagggg aagtatattt tgctgattct tttgacagag gaactctgtc
301 agggtggatt ttatccaaag ccaagaaaga cgataccgat gatgaaattg ccaaatatga
361 tggaaagtgg gaggtagagg aaatgaagga gtcaaagctt ccaggtgata aaggacttgt
421 gttgatgtct cgggccaagc atcatgccat ctctgctaaa ctgaacaagc ccttcctgtt
481 tgacaccaag cctctcattg ttcagtatga ggttaatttc caaaatggaa tagaatgtgg
541 tggtgcctat gtgaaactgc tttctaaaac accagaactc aacctggatc agttccatga
601 caagacccct tatacgatta tgtttggtcc agataaatgt ggagaggact ataaactgca
661 cttcatcttc cgacacaaaa accccaaaac gggtatctat gaagaaaaac atgctaagag
721 gccagatgca gatctgaaga cctattttac tgataagaaa acacatcttt acacactaat
781 cttgaatcca gataatagtt ttgaaatact ggttgaccaa tctgtggtga atagtggaaa
841 tctgctcaat gacatgactc ctcctgtaaa tccttcacgt gaaattgagg acccagaaga
901 ccggaagccc gaggattggg atgaaagacc aaaaatccca gatccagaag ctgtcaagcc
961 agatgactgg gatgaagatg cccctgctaa gattccagat gaagaggcca caaaacccga
1021 aggctggtta gatgatgagc ctgagtacgt acctgatcca gacgcagaga aacctgagga
1081 ttgggatgaa gacatggatg gagaatggga ggctcctcag attgccaacc ctagatgtga
1141 gtcagctcct ggatgtggtg tctggcagcg acctgtgatt gacaacccca attataaagg
1201 caaatggaag cctcctatga ttgacaatcc cagttaccag ggaatctgga aacccaggaa
1261 aataccaaat ccagatttct ttgaagatct ggaacctttc agaatgactc cttttagtgc
1321 tattggtttg gagctgtggt ccatgacctc tgacattttt tttgacaact ttatcatttg
1381 tgctgatcga agaatagttg atgattgggc caatgatgga tggggcctga agaaagctgc
1441 tgatggggct gctgagccag gcgttgtggg gcagatgatc gaggcagctg aagagcgccc
1501 gtggctgtgg gtagtctata ttctaactgt agcccttcct gtgttcctgg ttatcctctt
1561 ctgctgttct ggaaagaaac agaccagtgg tatggagtat aagaaaactg atgcacctca
1621 accggatgtg aaggaagagg aagaagagaa ggaagaggaa aaggacaagg gagatgagga
1681 ggaggaagga gaagagaaac ttgaagagaa acagaaaagt gatgctgaag aagatggtgg
1741 cactgtcagt caagaggagg aagacagaaa acctaaagca gaggaggatg aaattttgaa
1801 cagatcacca agaaacagaa agccacgaag agagtgaaac aatcttaaga gcttgatctg
1861 tgatttcttc tccctcctcc cctgcaagag tggtcctagg agaggacctg gcacacctta
1921 ggttgacatt cagaaaactt caagacatca ccatcagcag gctccagttg aacactagtc
1981 tgtgtaactt taaacatcta gcagtaaata cttgcagttg tgatataaag gaccctgttt
2041 ctgtagaaaa gaaaacattt aacataatgg ttgtgaaatg taacatgaag caaactaact
2101 tttttttttt aacatctttg tttttaaaat agaatgatag aactttgcca gtctttaaga
2161 tcttggctta atttaatgta ttaatctgtt tgtgcaaaca taataccacc atttaaaaat
2221 gttagggaga tgagttgcag tttttataat agattttttt taaagtttgg tattgtaaaa
2281 cattcacacc tctgtccctc aaaattgata attacgttta aagtgcagtc atttgtggtt
2341 agaatcttgt tttgtttgct tccattattg agttcctcct aaggaaattg aggagaggga
2401 ctgaatagaa gcccaaattc atataaaagt tgcgtttaag ttgtattaaa aatagatata
2461 taagaaaaaa ttctttcact tgatgtttgt tagaccagaa agtgtgtgtg ttctgtagct
2521 cagttcccag acagcttttt aggtagtgga ggaggtggct tcatgtggca cttgggcatt
2581 tatattccac ttgggagggt caggctgtgg ccttctggag caggtggctt gttaaggaat
2641 gctagcaggg catggcacgt gagctccgga atagatgtct tcatcacttc ttccactgtg
2701 tgttgacact gttttcctta cctatttcct cagatcccca gctttctcct ctgctatgca
2761 ttttcttcac agtgcagctt gcagtctgtt gctgaaaatg attataagcc ctgcataatg
2821 ttaagcttta ttgtgattac gtgtatgttt cttctttctt ttaagcagac ccataccttt
2881 ccagggtcaa agtacagaat agaatacatt gatacaaagt acagaaaaat actttgattt
2941 ttatccattt cttttactct gtgtaaagac ttgagaagtc taattcacag gcaaaccaat
3001 acagaattga ctgcagttga acagactaga agtatttgtg ggaggagtga catgaagcat
3061 gagttatctg attttttttg tagctgctat atattttaag ccttcatttg caattcatgt
3121 aacagttgtg tcataaatta cacaataaag cagtcctgtt caaatttttt tttaacgtgg
3181 cttgtagaat ttttaaaaaa gtgatcttag gtttgttttt tcatgcggga tgcagatggg
3241 tgctatcaga gcctctccca caccactata gtgtaataat gttattatta ctctacactg
3301 aaacgtattc agagttagat attattttag cttcagttgt tctttagagg ctttcaaatg
3361 taccgatgat actgtttctt gcactgaata tataaacact ccacagtgtt tatattggga
3421 agatattggg aaggaaatat atttgtaaaa gatgaaggct gtatctattt ttttttcttt
3481 ttaaagtttg ttcacttaaa ttcttttgag gatgggatgt atttttcttg ctgttcagtg
3541 ctttttcctt ttcatctgtt gttctgtggt cacagtgacc ttagctacat agcagacttt
3601 cccaaatgta ttgattacaa ataaacagtt gttacttagc aagacctgaa aatatgtctg
3661 caggtttctc cttgaagcaa atgtgtggga tcattgcatt tccagaaatc tgcctccttc
3721 accctccgtt gacagtatat gtcatgcctc actttcttct agctgagctt taaatcatta
3781 gagcttaaat tgtcagatcg ttcattgcct ttccagggtt atttagtaaa gtttgttgaa
3841 aacaaaaacg ccttttcttg gttctttttt cagttatttt gaaggtccag catcctgatt
3901 aaatgtctga cacattaatg aatgaccagc agcagctttc agctcttaaa aagacactta
3961 tattttgatt ttacatgctg gttacctgtt ccattgttgt caaatgccca ctctccatca
4021 gatgtgttcc tccatttttt tatccacaaa gtactcctca cttttcaatt tgtcatgtta
4081 ctaaatggtg ttacattaaa gccctgtgtt aagtgtcaaa aaaaaaaaaa aaaaaaaaaa
4141 aaaaaaaaaa aaaaaaaaa
//