LOCUS BC042540 1790 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cat eye syndrome chromosome region, candidate 5, mRNA
(cDNA clone MGC:16996 IMAGE:4342582), complete cds.
ACCESSION BC042540
VERSION BC042540.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1790)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1790)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: k Column: 16.
FEATURES Location/Qualifiers
source 1..1790
/db_xref="H-InvDB:HIT000052707"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16996 IMAGE:4342582"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1790
/gene="CECR5"
/db_xref="GeneID:27440"
/db_xref="HGNC:HGNC:1843"
CDS 13..1284
/gene="CECR5"
/codon_start=1
/product="cat eye syndrome chromosome region, candidate 5"
/protein_id="AAH42540.1"
/db_xref="GeneID:27440"
/db_xref="HGNC:HGNC:1843"
/translation="MAAWGCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSP
PTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQE
LSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDEL
RMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSP
GAGLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGL
MGKPSILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATH
DGAPELGAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLC
FSPGLMEASHVVNDVNEAVQLVFRKEGWALE"
BASE COUNT 346 a 493 c 560 g 391 t
ORIGIN
1 ggcgacggcc ggatggctgc gtggggctgt gtggctgcgc tcggcgcggc gcgtgggctt
61 tgctggcggg cggcgcgcgc ggctgcgggg ctccagggcc gccccgcccg caggtgctat
121 gctgtgggcc ccgctcagag cccacccacc tttgggttcc tgttggacat cgatggagtg
181 cttgtgcggg gccacagagt gatccctgct gctctgaaag ccttccgaag gctggtgaac
241 tcccaggggc agctgcgggt gcccgtggtt tttgttacaa atgctggtaa catcttacaa
301 cacagcaaag cccaggagct gtcagccctg ctggggtgcg aggtggatgc agaccaagtt
361 atcctctctc acagccccat gaagctcttc tccgagtacc atgagaagcg gatgctggtg
421 tctggacagg ggcccgtgat ggaaaatgcc cagggactgg gcttccgaaa tgtcgtcacc
481 gtggatgagc tgcggatggc ctttcctctg cttgacatgg tggacctgga gcggcggcta
541 aagaccacgc ccctcccgag gaatgacttc ccccgcattg aaggggtgct cctcctaggg
601 gagccggtcc gctgggagac cagcctgcag ctgatcatgg atgtcctcct cagcaatggg
661 agccctgggg ctggcctggc aacacccccc tacccccacc tccccgtcct agccagcaac
721 atggatctcc tgtggatggc tgaagccaag atgcccaggt ttggacatgg cacctttctg
781 ctgtgcctgg aaaccattta ccagaaagtg acgggcaagg agctgagata cgagggcctg
841 atgggcaaac ccagcatcct cacttaccag tatgccgagg acctgatcag gcgacaggcg
901 gagaggcggg gctgggccgc ccccatccgg aagctctatg ctgtgggtga taaccctatg
961 tctgacgtat acggcgccaa cctgttccac cagtacctgc agaaggcaac gcatgatggg
1021 gcgccagaac taggggccgg gggcacacgg cagcaacagc cctcagcaag ccagagctgc
1081 atctccatcc tggtgtgtac aggcgtctac aatcccagga acccacagtc cacggagcct
1141 gtccttggag gaggggagcc tccattccac gggcaccgag acttatgctt cagtccaggg
1201 ctcatggagg cctcccacgt ggtgaatgac gtgaatgagg ctgtgcagct ggtcttccgc
1261 aaggagggct gggctttgga gtgagggcag tgcggtggag gtgagggggt gagcctggac
1321 ctgtgggcga gtcccattgg ctgggctctg gcctgatcac tgggctcagg tcagggcttg
1381 gttcccttgc cacccttctt gctgccccat gagtgtggca ttactggtca cttggaagaa
1441 gacagtgact ctttttccct gctgggtagc attttgtatg gaacggttgg aattttctgg
1501 gcccagttcc cacgtgcctt tcgtggcagt ctaacctcag gccattctct tcccctgtgt
1561 gcctcagtgt ccttctcatt tcagtaggga cttctgaaat gggggaggca gtgtggaata
1621 ctgtggatgt ctgtgcagag cctttgccgg cactgaaggc atgcagcctg tcggcagagt
1681 gtcttaacac cagatgctac tttttactgt attgtagttt attgcccgga gatgtggggc
1741 ttttttttta aataaaataa tcataataaa tgttaaaaaa aaaaaaaaaa
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