LOCUS BC042478 4658 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens apolipoprotein L domain containing 1, mRNA (cDNA clone
IMAGE:3874052), partial cds.
ACCESSION BC042478
VERSION BC042478.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4658)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4658)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: n Column: 7.
FEATURES Location/Qualifiers
source 1..4658
/db_xref="H-InvDB:HIT000097250"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3874052"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4658
/gene="APOLD1"
/gene_synonym="DKFZP434F0318"
/gene_synonym="FLJ25138"
/db_xref="GeneID:81575"
/db_xref="HGNC:HGNC:25268"
CDS <1..910
/gene="APOLD1"
/gene_synonym="DKFZP434F0318"
/gene_synonym="FLJ25138"
/codon_start=2
/product="APOLD1 protein"
/protein_id="AAH42478.1"
/db_xref="GeneID:81575"
/db_xref="HGNC:HGNC:25268"
/translation="GGARGGQRSAASRGQRCNPTRSRMFRAPCHRLRARGTRKARAGA
WRGCTFPCLGKGMERPAAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERL
RRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSD
LSLIFCNSRELRRVQEIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALY
NSVYFIVFFGSRGFLIPRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLES
RVQLCTKSSRGHDLKISADQRAGLFF"
BASE COUNT 1185 a 1025 c 1132 g 1316 t
ORIGIN
1 cgggggtgcg cggggcggtc agcgatctgc agcttcgcgg ggacagagat gtaacccaac
61 tcgttcacgg atgttccgcg cgccgtgtca ccggctgcgg gccaggggta ctcggaaggc
121 gcgggcagga gcctggcgag gatgcacctt cccctgcctt ggaaagggaa tggagaggcc
181 ggcggcccgg gagccgcatg ggcccgacgc gctgcggcgc ttccagggac tgctgctgga
241 ccgccgaggc cggctgcacg gccaggtgct gcgcctgcgc gaggtggccc ggcgcctgga
301 gcgcctgcgc aggcgctccc tcgtagccaa cgtggccggc agctcgctga gcgcaacggg
361 cgccctcgcc gccatcgtgg ggctctcgct cagcccggtc accctgggga cctcgctgct
421 ggtgtcggcc gtggggctgg gggtggccac agccggaggg gccgtcacca tcacgtccga
481 tctctcgctg atcttctgca actcccggga gctgcggagg gtgcaggaga tcgcggccac
541 ctgccaggac cagatgcgag agatcctgag ctgcctcgag tttttctgcc gctggcaggg
601 ctgcggggac cgccagctgc tgcagtgcgg gaggaacgcc tccatcgccc tgtacaattc
661 tgtctacttc atcgtcttct ttggctcacg tggcttcctc atccccaggc gggcggaggg
721 ggacaccaag gttagccagg ccgtgctgaa ggccaagatt cagaaactgg ccgagagcct
781 ggagtcctgc accggggctc tggacgaact cagcgagcag ctggagtctc gggttcagct
841 ctgcaccaag tccagtcgtg gccacgacct caagatctct gctgaccagc gtgcagggct
901 gtttttctga gaacatcctt tccccctaat gaccgaggcc agcaaatcat cctcatggga
961 tgctccagaa tttgtagctc ccttaggaaa acaccaagct gggttaggag ccgaaggcaa
1021 aggatgagaa aaactgtttt tgaagtgggc aggtccccaa agcccttctt ttcccatcac
1081 tgtgacatct gcctgggctt gagtgctacg gacttttcag tcttcctagt ggaaaaatgt
1141 gacccaaaaa ctctttttcc tttatcaaaa actttctgtc taaacacagc tgggcaggca
1201 ctcctgtttt aaagttattt cggggtccct gaccctgccc tggtggcttg gcctgagact
1261 ggagagagtg ccatcctctg ggtcctctcc aagtcctact agtctttgaa gtcctcaaaa
1321 tgtgcgtgag gaaggcattt gcctctattc cagaatttct gatacaaaga actccagaat
1381 ccagagcaaa tcagcccttc tctgaacgtt gtaggatggt tcagaaccca gagaggaccc
1441 tggtgctgat atctcctcct cttccctttc ccctcagctt acttactccc agatgcggcc
1501 tgggtatgaa gtaggccttt cctgagtggc tcccaatcca gtcctccaag tactcagagg
1561 ggaagcccgt gaagccgtca tctaagtcct gctccctcac atgaagctga gggccagata
1621 gatggagcga ctgccaactt catttcccga catcattgtg ttcagaagag agtgatgggt
1681 tttgagttag acagtcctgg gcttgagaca ggctttgtca ctactgtgtg agtgtagcca
1741 cctaatctct ctgagactgt gtaaaacaaa gatgataaaa tctcaccctg ttgtgagata
1801 ttaaatgagc caaagtgcct agcatgatgg tgctggctca tatagtgtag tccctggaat
1861 ggcaaattaa catcacccag gaacttgtta gaaaggcaaa ttcttggaca caaccctcct
1921 gatttatgga atcagaaact ctggctgtgg ggcccagcaa cctgagttta aacaatttct
1981 ctgggtggtt ctgcggcaca ctaaggtttg aaaatcacta caacaaatgc taacttctaa
2041 tccccttgat gagctttcac gaagtctcac ggcttctcta gggactccat ggtcttcaga
2101 gtcgttcaca gatgaccaag gacagactgt gtcccagaag ccaaaatgag agagagagag
2161 agagcacgcg tacgtgcacc ctggggcagt gtctcaccgt atgaataagg gatgtaacac
2221 taaaagccca ttagggggca gtgtttcccg cctgttgtag aaactggtac agaaaggaat
2281 atgaagttcc tgaaactgac ctttgtctat tattaccttc tctgaaaagt gccagtccat
2341 gtatttttta tttattttaa gtttgtaatt taatttttaa ttattgttta gtgtttgcat
2401 ttaattttat ttaatcacca catttagaaa ataataagag caagtttcta aatgggagac
2461 tgctgaggct ctttgcaaga gatgagatta agtttgagtt tctaaggcag ggcatgagct
2521 ggaaatagca ttgctttcct tgattgtctc tctccttcag ggagattctt tttctctagt
2581 gttttaagtg atcctttgaa gtaagtgtgg agagtcttga atggcaagac caggagctga
2641 gtttaagctt gtaatggaag cttgcattgt gggatatata actgaggaag catatttatc
2701 ctgaaggtat tttgccagaa ggtatcactt gacctggaaa aggaatctat ttagttcagg
2761 aaagataaaa agtttagagg tatgtgaagg aagcacttag aacttgcaag cctgatgtcc
2821 tatcaagtta tgtcttctgg gtgacagaca aaatagcttg tcttatggtg gtgatgtgtt
2881 gcattttcac tttggggtct gtaagaaact gtcagtgaaa atatgtacaa ttccttcaat
2941 ttccattctt aacaactgta atgttgaaaa ataagttgaa aagtctttgg gaccatacat
3001 gcaaaaacgg tgcctctgtt acttaattat ttaatattct ataaatgtac ccaatctgtc
3061 cgcacccttc ccagtgatgg ggcagtatgt ctgaggaagt ataatttcag tactggggtc
3121 ggggagagga ggtgatgttt ctacattttt attttttcta taaattgcaa ttggtctgta
3181 tgctggttta ttttgaaatt tatattggtt tcttttcaag ctggtgtcat ctcctagact
3241 gtttcaccca gatgctagca tttttttttt ttttttgaga cagagtctca ctctgtcacc
3301 taggctggag ttgcagtggt ttgatctcgg ctcactgcaa cctccgactc ctgggttcaa
3361 gcaattctgc ctcagcctcc tgagtagctg ggattacaga tgtgcaccag cacacccggc
3421 taattttttg tatttttagt agagacaggg tttcgccatg ttggccaggc tggtcttgaa
3481 ctcctggcct tatgtgatcc gcccaccttg gcttcccaaa gtgctgggat tacaggcatg
3541 agccacctcg cctggccaga tgctagcatt ttagatcaaa caattcattt tagatgaatt
3601 gttttgtttc acaatcattt taaatcattt tagaatgtac ttcacattat tagttgtgtt
3661 atggcataaa ggtacaacca ttccctaact ccatctttta ttaatgctta agtttaaatt
3721 atattcttcc aatgcctaag ctattcccta gaattaaact gggcactttt ggaagcagca
3781 acagtaacag cagcagcaaa cttttcctct catattttgg gtgtatcaaa agttctagac
3841 ttttgaagtt atgatttcag tggcccactt tatttctaag gaagagtgtc tactttggaa
3901 cgatactttg cacatagtag gaactcaaga aatacatttg aataattata attaactgtt
3961 tagctatctt aatgagaatt tgttgacaac aaaagatcat ccatcgcctt atgtgtgagt
4021 aagattggag cctctatcaa gatttagtca agttcagtta gattgattct agaaacaaat
4081 atttatttct ttcttttacg gggatgtgaa taaggctttt ccttaaggcc ttcattcttt
4141 aaacaaacag gttgaaatgg tatgttgtaa aagagaagac gggagagagg tatttagatg
4201 ataagtgtac ttcacaaaaa tgccaaagtt tgaaaaatag gtatgtttgt tctaaatgtt
4261 taagtgcttc tctgttaggt tctggggctt gcaatcattt gaattgttct gtttcacaat
4321 aaaggagatt cactgggttc tgcattttca ggattcaata gaactgctcc attaaaaaaa
4381 taatccttag caagcattcg aatcctaact gctttgatgc acttgccctc gggcacctgt
4441 catttccaat atggtaggtg tcaaagtcaa aagtatttac tgggagaaaa aagagaggag
4501 tggttgtaga agtctcccta aatcagacat gtcaagcaat cagccaacgt ggtgtatttc
4561 tcattcaata ttttagtgtg aattgagaca ctgagataaa gacatcgtgc agagataaat
4621 ggggatacag ttaaaaaaaa aaaaaaaaaa aaaaaaaa
//