LOCUS BC042180 995 bp mRNA linear HUM 27-SEP-2007
DEFINITION Homo sapiens ATPase, class VI, type 11B, mRNA (cDNA clone
IMAGE:5395206), complete cds.
ACCESSION BC042180
VERSION BC042180.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 995)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 995)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: l Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62632749
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..995
/db_xref="H-InvDB:HIT000052674"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5395206"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..995
/gene="ATP11B"
/gene_synonym="ATPIF"
/gene_synonym="ATPIR"
/gene_synonym="DKFZP434J238"
/gene_synonym="DKFZP434N1615"
/db_xref="GeneID:23200"
/db_xref="HGNC:HGNC:13553"
/db_xref="MIM:605869"
CDS 258..845
/gene="ATP11B"
/gene_synonym="ATPIF"
/gene_synonym="ATPIR"
/gene_synonym="DKFZP434J238"
/gene_synonym="DKFZP434N1615"
/codon_start=1
/product="ATP11B protein"
/protein_id="AAH42180.1"
/db_xref="GeneID:23200"
/db_xref="HGNC:HGNC:13553"
/db_xref="MIM:605869"
/translation="MWRWIRQQLGFDPPHQSDTRTIYVANRFPQNGLYTPQKFIDNRI
ISSKYTVWNFVPKNLFEQFRRVANFYFLIIFLVQLMIDTPTSPVTSGLPLFFVITVTA
IKQGYEDWLRHNSDNEVNGAPVYVVRSGGLVKTRSKNIRVGDIVRIAKDEIFPADLVL
LSSDRLDGSCHVTTASLDGETNLKVCLHMFEYCSW"
BASE COUNT 275 a 206 c 262 g 252 t
ORIGIN
1 caataatgaa ggtggctgcg gcgcggcggc aggctcagct gcgccgggcg ggggcggcgc
61 tggggccgcg cctgtaggac tcggggccga cgccgcggga tggggacgcg gcgcggggag
121 tgaggcagtg gcggcggcgg cggtaagcgg aacttcggcc cgaggggctc gcccgctccc
181 gcctctgtct tgtcggcctc cacctgcagc cccgcggccc ccgcgccccg cgggacccgg
241 acggcgacga cgggggaatg tggcgctgga tccggcagca gctgggtttt gacccaccac
301 atcagagtga cacaagaacc atctacgtag ccaacaggtt tcctcagaat ggcctttaca
361 cacctcagaa atttatagat aacaggatca tttcatctaa gtacactgtg tggaattttg
421 ttccaaaaaa tttatttgaa cagttcagaa gagtggcaaa cttttatttt cttattatat
481 ttttggttca gcttatgatt gatacaccta ccagtccagt taccagtgga cttccattat
541 tctttgtgat aacagtaact gccataaagc agggatatga agattggtta cggcataact
601 cagataatga agtaaatgga gctcctgttt atgttgttcg aagtggtggc cttgtaaaaa
661 ctagatcaaa aaacattcgg gtgggtgata ttgttcgaat agccaaagat gaaatttttc
721 ctgcagactt ggtgcttctg tcctcagatc gactggatgg ttcctgtcac gttacaactg
781 ctagtttgga cggagaaact aacctgaagg tttgcttgca tatgtttgag tattgctctt
841 ggtgaacaaa gtgtctttgg attataatta tacttaactt tggttaaagt agtaaagttt
901 gaccagatta aggggaagtt tttaaaatta ctatttcaaa aataaaaagg ttttaagaaa
961 gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//