LOCUS BC042147 1965 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 3, mRNA (cDNA clone
MGC:52352 IMAGE:3619576), complete cds.
ACCESSION BC042147
VERSION BC042147.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1965)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1965)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: b Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777649.
FEATURES Location/Qualifiers
source 1..1965
/db_xref="H-InvDB:HIT000052661"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52352 IMAGE:3619576"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1965
/gene="KCNN3"
/gene_synonym="hSK3"
/gene_synonym="KCa2.3"
/gene_synonym="SK3"
/gene_synonym="SKCA3"
/db_xref="GeneID:3782"
/db_xref="HGNC:HGNC:6292"
/db_xref="MIM:602983"
CDS 132..1412
/gene="KCNN3"
/gene_synonym="hSK3"
/gene_synonym="KCa2.3"
/gene_synonym="SK3"
/gene_synonym="SKCA3"
/codon_start=1
/product="potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 3"
/protein_id="AAH42147.1"
/db_xref="GeneID:3782"
/db_xref="HGNC:HGNC:6292"
/db_xref="MIM:602983"
/translation="MERPIKDSMFSLALKCLISLSTIILLGLIIAYHTREVQLFVIDN
GADDWRIAMTYERILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDIIL
SIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLV
FSISLWIIAAWTVRVCERYHDQQDVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGV
CLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWL
IYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLSDQANTLVDLSKMQNVMY
DLITELNDRSEDLEKQIGSLESKLEHLTASFNSLPLLIADTLRQQQQQLLSAIIEARG
VSVAVGTTHTPISDSPIGVSSTSFPTPYTSSSSC"
BASE COUNT 486 a 552 c 497 g 430 t
ORIGIN
1 caggaaagtc agcttgaagg acactccttg cagggactga gctggcacct actccttaga
61 gcttgctgat accaggcctg ccacgcgaca tctgcaagga cagttgtttg gtgttttgct
121 tcaggttata gatggagaga cctataaagg actccatgtt ttcgttggcc ctgaaatgcc
181 ttatcagtct gtccaccatc atccttttgg gcttgatcat cgcctaccac acacgtgaag
241 tccagctctt cgtgatcgac aatggcgcgg atgactggcg gatagccatg acctacgagc
301 gcatcctgta catcagcctg gagatgctgg tgtgcgccat ccaccccatt cctggcgagt
361 acaagttctt ctggacggca cgcctggcct tctcctacac accctcccgg gcggaggccg
421 atgtggacat catcctgtct atccccatgt tcctgcgcct gtacctgatc gcccgagtca
481 tgctgctgca cagcaagctc ttcaccgatg cctcgtcccg cagcatcggg gccctcaaca
541 agatcaactt caacacccgc tttgtcatga agacgctcat gaccatctgc cctggcactg
601 tgctgctcgt gttcagcatc tctctgtgga tcattgctgc ctggaccgtc cgtgtctgtg
661 aaaggtacca tgaccagcag gacgtaacta gtaactttct gggtgccatg tggctcatct
721 ccatcacatt cctttccatt ggttatgggg acatggtgcc ccacacatac tgtgggaaag
781 gtgtctgtct cctcactggc atcatgggtg caggctgcac tgcccttgtg gtggccgtgg
841 tggcccgaaa gctggaactc accaaagcgg agaagcacgt tcataacttc atgatggaca
901 ctcagctcac caagcggatc aagaatgctg cagccaatgt ccttcgggaa acatggttaa
961 tctataaaca cacaaagctg ctaaagaaga ttgaccatgc caaagtgagg aaacaccaga
1021 ggaagttcct ccaagctatc caccagttga ggagcgtcaa gatggaacag aggaagctga
1081 gtgaccaagc caacactctg gtggaccttt ccaagatgca gaatgtcatg tatgacttaa
1141 tcacagaact caatgaccgg agcgaagacc tggagaagca gattggcagc ctggagtcga
1201 agctggagca tctcaccgcc agcttcaact ccctgccgct gctcatcgcc gacaccctgc
1261 gccagcagca gcagcagctc ctgtctgcca tcatcgaggc ccggggtgtc agcgtggcag
1321 tgggcaccac ccacacccca atctccgata gccccattgg ggtcagctcc acctccttcc
1381 cgaccccgta cacaagttca agcagttgct aaataaatct ccccactcca gaagcattac
1441 ccataggtct taagatgcaa atcaactctc tcctggtcgc tttgccatca agaaacattc
1501 agaccaggga acggaaagaa gagagaccga gctaattaac taactcatgt tcattcagcg
1561 tgcttggtcc gacatgcctt gaaaccagaa atctaatctc tgtttaggtg cctctacttg
1621 ggagcgggaa gaggagatga caggaagcga cgcctctggc agggcccttg ctgcagagtt
1681 ggtggagaac agaaatccac gctcaatctc aggtcttcac gcggggggtg ggggtcagat
1741 gcactgaagt agccaacagc gaagccagtc cagaagaggg gtccgctggg agggagggtt
1801 gtgtcaggct tgggggatgg gctcttcgcc atgggggtct ttgaacacac ctctctcctt
1861 tccttttgtc tacggaagcc tctgggtgac aaaagtaaaa gagagctgcc cacaacttgc
1921 caaaacagat atactcgaat cagactgaaa aaaaaaaaaa aaaaa
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