LOCUS BC041860 3961 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens lipoxygenase homology domains 1, mRNA (cDNA clone
MGC:43678 IMAGE:5271046), complete cds.
ACCESSION BC041860
VERSION BC041860.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3961)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3961)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: m Column: 12.
FEATURES Location/Qualifiers
source 1..3961
/db_xref="H-InvDB:HIT000052629"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43678 IMAGE:5271046"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3961
/gene="LOXHD1"
/gene_synonym="FLJ32670"
/gene_synonym="LH2D1"
/db_xref="GeneID:125336"
CDS 392..3736
/gene="LOXHD1"
/gene_synonym="FLJ32670"
/gene_synonym="LH2D1"
/codon_start=1
/product="LOXHD1 protein"
/protein_id="AAH41860.1"
/db_xref="GeneID:125336"
/translation="MNNEITYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEGG
GGGDNNPLDNLALEQKDKSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKS
SKTNSDKFERDSIEIFTVETLDLGDLWKVRLGNDNTGKAPGWFVDWVEVDAPSLGKCM
TFPCGRWLAKNEDDGSIIRDLFHAELQTRLYTPFVPYEITLYTSDVFAAGTDANIFII
IYGCDAVCTQQKYLCTNKREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNP
GWHCSHVDIRRLLPDKDGAETLTFPCDRWLATSEDDKKTVRELVPYDIFTEKYMKDGS
LRQVYKEVEEPLDIVLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRT
NKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCG
RWLSLKKEDGRLERLFYEKEYTGDRSSNCSSPADFWEIALSSKMADVDISTVTGPMAD
YVQEGPIIPYYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRGFSRGS
VEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLAVPTQGTKYMLNCNCWLAKDR
GDGITSRVFDLLDAMVVNIGVKVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQ
LDKKKARFEREQNDTFIMEILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLT
MFYYGDWLSQRKGKKTLVCEMCAVIDEEEMMEWTSYTVAVKTSDILGAGTDANVFIII
FGENGDSGTLALKQSANWNKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHL
SYVDVKDNSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKICDELEETTYEIVIETG
NGGETRENVWLILEGRKNRSKEFLMENSSRQRAFRKGTTDTFEFDSIYLGDIASLCVG
HLAREDRFIPKRELAWHVKTITITEMEYGNVYFFNCDCLIPLKRKRKYFKVFEVTKTT
ESFASKVQSLVPVKYEVIVTTGYEPGAGTDANVFVTIFGANGDTGKRELKQKMRNLFE
RGSTDRFFLETLELVVTRLGLAAECG"
BASE COUNT 1040 a 973 c 1132 g 816 t
ORIGIN
1 actttgtgga ggggttatga gagaattgca ggcagggccc cagcacctag agcccatggg
61 ccagctgacc cacaggaaca aacagagaat ggcgttgagt ggcagatgct gaggcacttg
121 gttcctggtg tggtctgctt cctcccgtgc atggagcagt gtgtgcattc acatggtgtg
181 atccatatgg ccctcttcac acctaaatgg tgggcaaatc cgtcttcagt ttctgacagt
241 cactttggat ttgcacagca ccagctcata gcagacagac accttcacca tctatgccat
301 tgacctgggg gccctgacca agattcggat tcgccacgac aacacaggca acagagcagg
361 ctggttcctg gacagaatag acattactga catgaacaac gagatcacgt actactttcc
421 atgccaacgt tggctggcag tggaggaaga tgatggccag ctgtccaggg agctgttgcc
481 agtggatgag tcctatgtgc tgccacagag cgaggagggt gggggaggcg gtgacaacaa
541 ccccctcgac aacctggccc tggagcagaa agataaatct accacattct cagtgaccat
601 aaagactggg gttaagaaga atgcgggcac agatgctaat gtcttcatca cactctttgg
661 cacacaggat gacactggaa tgaccctcct gaagtcctcc aagacaaaca gcgataagtt
721 tgagagggac agcattgaaa tcttcacggt ggagacgctg gatctgggag acctgtggaa
781 agtccggctt ggcaatgaca acacaggcaa ggccccaggc tggtttgtag actgggtaga
841 ggtggatgcc ccatctcttg ggaagtgcat gacgtttccc tgtggccgct ggctggccaa
901 aaacgaagac gacgggtcca tcatcagaga cctcttccat gcagagcttc agacgaggct
961 gtacacacca tttgttcctt acgagatcac cctctacacc agtgatgtct ttgctgctgg
1021 gacagatgcc aacatcttca tcatcatcta tggctgcgat gccgtgtgca cccagcagaa
1081 gtatctgtgt accaacaaga gggaacagaa gcagttcttt gagaggaagt ctgcctcccg
1141 cttcatcgta gagttagaag atgtgggaga aatcattgaa aaaattcgga ttggccataa
1201 taacacgggc atgaatcctg ggtggcactg ctctcacgtg gacatccgca ggctcctccc
1261 ggataaagac ggtgcagaga ccttgacttt cccatgcgat cggtggcttg ccacctctga
1321 ggatgacaaa aagaccgttc gagaactggt tccatatgac atcttcactg agaaatacat
1381 gaaagatggg tccttacggc aagtctacaa ggaagtagaa gagcctctgg acattgtgct
1441 gtactcggtg cagatcttca cagggaacat tcctggggca gggacggatg ccaaggtgta
1501 catcaccatc tatggagacc tcggggacac tggggagcga taccttggca agtcagagaa
1561 ccggaccaac aagttcgaga gaggaacggc tgacaccttc atcatcgagg ccgctgacct
1621 aggcgtcatc tacaagatca agctccgcca tgacaactcc aagtggtgcg cagactggta
1681 cgtggagaag gtggagatct ggaatgacac caacgaggac gagttcctgt tcctatgcgg
1741 gcgctggctc tccctgaaga aggaggatgg gcgactcgag aggctctttt acgagaagga
1801 gtacactggg gaccgcagca gcaactgcag cagccctgct gacttctggg agatcgccct
1861 gagctccaag atggccgatg tcgacatcag cacagtgacc gggcccatgg ctgactacgt
1921 tcaagagggc ccaattattc catactatgt gtcagtcacc actgggaagc acaaggacgc
1981 ggccactgac agccgagcct tcatctttct catcggggag gatgatgaac gtagtaagcg
2041 catctggttg gactaccccc gagggaagag gggcttcagc cgtggctctg tggaggagtt
2101 ctacgtcgca ggcttggatg tgggcatcat caagaaaata gagctgggcc atgacggggc
2161 ctcccctgag agctgctggc tggtggaaga gttgtgtttg gcagtgccca cccagggcac
2221 caagtacatg ttgaactgta actgctggct ggccaaggac agaggcgacg gcatcacctc
2281 ccgtgtcttc gacctcttgg atgccatggt ggtgaacatt ggggtgaagg ttctctatga
2341 aatgacggtg tggacagggg atgtggttgg cgggggcact gactccaaca tcttcatgac
2401 cctctacggc atcaacggga gcacagagga gatgcagctg gacaaaaaga aagccaggtt
2461 tgagcgggag cagaacgaca ccttcatcat ggagatccta gacattgctc cattcaccaa
2521 gatgcggatc cggattgatg gcctgggcag tcggccggag tggttcctgg agaggatcct
2581 actgaagaac atgaacactg gagacctgac catgttctac tatggagact ggctgtccca
2641 gcggaagggc aagaagaccc tggtgtgtga aatgtgtgcc gttatcgatg aggaagaaat
2701 gatggagtgg acctcctaca ccgtcgcagt taagaccagc gacatcctgg gagcaggcac
2761 tgatgccaac gtgttcatca tcatcttcgg ggagaacggg gatagtggga cactggccct
2821 gaagcagtcg gcaaactgga acaagtttga gcggaacaac acggacacat tcaacttccc
2881 tgacatgctg agcttgggcc acctctgcaa gctgagggtc tggcacgaca acaaagggat
2941 atttcctggc tggcatctga gctatgtcga tgtgaaggac aactcccgcg acgagacctt
3001 ccacttccag tgtgactgct ggctctccaa gagtgagggt gacgggcaga cggtccgcga
3061 ctttgcctgt gccaacaaca agatctgtga tgagctggaa gagaccacct acgagatcgt
3121 catagaaacg ggcaacggag gcgaaaccag ggagaacgtc tggctcatcc tggagggcag
3181 gaagaaccga tccaaagagt ttctcatgga aaattcttct aggcagcggg cctttaggaa
3241 ggggaccaca gacacgtttg agtttgacag catctacttg ggggacattg cctccctctg
3301 tgtgggccac cttgccaggg aagaccggtt tatccccaag agagaacttg cctggcatgt
3361 caagaccatc accatcaccg agatggagta cggcaatgtg tacttcttta actgtgactg
3421 cctcatcccc ctcaagagga agaggaagta cttcaaggta ttcgaggtta ccaagacgac
3481 agagagcttt gccagcaagg tccagagcct ggtgcccgtc aagtacgaag tcatcgtgac
3541 aacaggctat gagccagggg caggcactga tgccaacgtc ttcgtgacca tctttggggc
3601 caacggagac acaggcaagc gggagctgaa gcagaaaatg cgcaacctct tcgagcgggg
3661 cagcacagac cgcttcttcc tggagacgct ggagctggta gtgaccaggc tgggacttgc
3721 tgcagagtgt ggatgagaaa ttgagtcttc acccagggga tagaagtgga gaagcagagg
3781 ccatcaagat ggtgtatttt aagcaaaaac taattaacac ttttccccaa aaaagctagg
3841 ctaattaaat tattaccaac catatcctat aaagaactca tcttagcatc tgcttgctaa
3901 gaagtgtata cttttcccca gtttcaataa acccagtggc aagtgaaaaa aaaaaaaaaa
3961 a
//